[BioC] Citation of R, Bioconductor and Affy

Laurent Gautier lgautier at altern.org
Wed Oct 6 05:44:02 CEST 2004

Jordi Altirriba Gutiérrez wrote:
> Dear users,
> I'm preparing a manuscript which includes the use of R, Bioconductor and 
> the Affy package.
> The citations that I have found are:
> 1.- R
> R: Development core team (2004). R: A language and enviroment for 
> statistical computing. R foundation for statistical computing. Vienna, 
> Austria. http://www.r-project.org
> 2.- Bioconductor
> Ihaka R and Gentleman R. R: A Language for Data Analysis and Graphics}. 
> Journal of Computational and Graphical Statistics. 1996 (5)3:299-314.
> 3.- Affy package
> Rafael. A. Irizarry, Benjamin M. Bolstad, Francois Collin, Leslie M. 
> Cope, Bridget Hobbs and Terence P. Speed (2003), Summaries of Affymetrix 
> GeneChip probe level data Nucleic Acids Research 31(4):e15

The citation for the affy package is:
Gautier, Cope, Bolstad and Irizarry - Bioinformatics 2004
(as found in the vignette for the affy package).

> Or I should citate any other reference? Such as:
> Bioconductor: open software development for computational biology and 
> bioinformatics
> Robert C Gentleman , Vincent J Carey , Douglas M Bates , Ben Bolstad , 
> Marcel Dettling , Sandrine Dudoit , Byron Ellis, Laurent Gautier, 
> Yongchao Ge, Jeff Gentry, Kurt Hornik, Torsten Hothorn, Wolfgang Huber, 
> Stefano Iacus, Rafael Irizarry, Friedrich Leisch, Cheng Li, Martin 
> Maechler, Anthony J Rossini, Gunther Sawitzki, Colin Smith, Gordon 
> Smyth, Luke Tierney, Jean YH Yang and Jianhua Zhang
> Genome Biology 2004, 5:R80
> Thank you for your time.
> Jordi Altirriba
> PhD student
> Hospital Clinic - Barcelona - Spain
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