[BioC] is my normalization right?
xpzhang at genetics.ac.cn
Sat May 29 09:21:55 CEST 2004
Thank you for your answer!
My raw-data was from GenePix. Because I used only Cy3 in my whole
microarray experiment, I only extract data by the software,and try to
normalize the data by Bioconductor.
I made a .txt file for the raw data, it was just like this:
Gene Name Contrl(intensity) Treat1(intensity) Treat2(intensity) Treat3(intensity)
I want to use mutiple slides normalization with intensity dependent, is
it appropriate? And could you tell me howto? I am trying to find out
ways by reading Bioconductor's document and help files,but I feel really
Thank you very much!
On Fri, 28 May 2004 11:52:03 -0700 (PDT)
Jean Yee Hwa Yang <jean at biostat.ucsf.edu> wrote:
> > I have read the pdf files of marrayclasses, marrayinput, marraynorm, marrayplots and marraytools. And I have tested the command in marraynorm's chm help file. And I have not found out how to output the normalized data.
> Yes, you can output the files using
> write.table(maM(swirl), file="test.txt", sep="\t")
> In the new marray package, you can smiply output the file with
Xiaopeng ZHANG<xpzhang at genetics.ac.cn>
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