[BioC] Rgraphviz installation problems

[Jacob Hurst]

this is the error message I get when installing Rgraphviz.
my $LD_LIBRARY_PATH is (I think set correctly) /usr/local/lib/graphviz
my graphviz version is 1.12 (although i previously installed 1.13 by mistake)
my R version is 1.9.0
	I would really appreciate some help!
	cheers jake


:/usr/local/lib/R# R INSTALL Rgraphviz
* Installing *source* package 'Rgraphviz' ...
** libs
gcc -I/usr/lib/R/include `dotneato-config --cflags`   -D__NO_MATH_INLINES 
-mieee-fp -Wall -fPIC  -g -O2 -c RgraphvizInit.c -o RgraphvizInit.o
In file included from /usr/local/include/graphviz/render.h:49,
                 from common.h:20,
                 from RgraphvizInit.c:1:
/usr/local/include/graphviz/macros.h:28:1: warning: "NEW" redefined
In file included from common.h:11,
                 from RgraphvizInit.c:1:
/usr/lib/R/include/Rdefines.h:129:1: warning: this is the location of the 
previous definition
In file included from /usr/local/include/graphviz/types.h:11,
                 from /usr/local/include/graphviz/render.h:51,
                 from common.h:20,
                 from RgraphvizInit.c:1:
/usr/local/include/graphviz/pathplan.h:11: warning: ignoring #pragma 
prototyped
In file included from /usr/local/include/graphviz/types.h:11,
                 from /usr/local/include/graphviz/render.h:51,
                 from common.h:20,
                 from RgraphvizInit.c:1:
/usr/local/include/graphviz/pathplan.h:16:22: pathgeom.h: No such file or 
directory
/usr/local/include/graphviz/pathplan.h:24: error: parse error before '*' token
/usr/local/include/graphviz/pathplan.h:28: error: parse error before '*' token
/usr/local/include/graphviz/pathplan.h:33: error: parse error before '*' token
In file included from /usr/local/include/graphviz/render.h:51,
                 from common.h:20,
                 from RgraphvizInit.c:1:
/usr/local/include/graphviz/types.h:476: error: parse error before 
"Ppolyline_t"
/usr/local/include/graphviz/types.h:476: warning: no semicolon at end of 
struct or union
/usr/local/include/graphviz/types.h:488: error: parse error before '}' token
/usr/local/include/graphviz/types.h:488: warning: type defaults to `int' in 
declaration of `Agedgeinfo_t'
/usr/local/include/graphviz/types.h:488: warning: data definition has no type 
or storage class
In file included from /usr/local/include/graphviz/render.h:52,
                 from common.h:20,
                 from RgraphvizInit.c:1:
/usr/local/include/graphviz/graph.h:11: warning: ignoring #pragma prototyped
In file included from /usr/local/include/graphviz/render.h:52,
                 from common.h:20,
                 from RgraphvizInit.c:1:
/usr/local/include/graphviz/graph.h:23:17: cdt.h: No such file or directory
/usr/local/include/graphviz/graph.h:57: error: parse error before "Dict_t"
/usr/local/include/graphviz/graph.h:57: warning: no semicolon at end of struct 
or union
/usr/local/include/graphviz/graph.h:62: error: parse error before '}' token
/usr/local/include/graphviz/graph.h:82: error: parse error before 
"Agedgeinfo_t"
/usr/local/include/graphviz/graph.h:82: warning: no semicolon at end of struct 
or union
/usr/local/include/graphviz/graph.h:86: error: parse error before "Dict_t"
/usr/local/include/graphviz/graph.h:86: warning: no semicolon at end of struct 
or union
/usr/local/include/graphviz/graph.h:91: error: parse error before '}' token
/usr/local/include/graphviz/graph.h:101: error: parse error before "Dict_t"
/usr/local/include/graphviz/graph.h:101: warning: no semicolon at end of 
struct or union
/usr/local/include/graphviz/graph.h:103: error: parse error before '}' token
In file included from /usr/local/include/graphviz/render.h:53,
                 from common.h:20,
                 from RgraphvizInit.c:1:
/usr/local/include/graphviz/globals.h:77: error: parse error before 
"FIG_CodeGen"
/usr/local/include/graphviz/globals.h:77: warning: type defaults to `int' in 
declaration of `FIG_CodeGen'
/usr/local/include/graphviz/globals.h:77: warning: type defaults to `int' in 
declaration of `GD_CodeGen'
/usr/local/include/graphviz/globals.h:77: warning: type defaults to `int' in 
declaration of `memGD_CodeGen'
/usr/local/include/graphviz/globals.h:77: warning: type defaults to `int' in 
declaration of `HPGL_CodeGen'
/usr/local/include/graphviz/globals.h:78: warning: type defaults to `int' in 
declaration of `ISMAP_CodeGen'
/usr/local/include/graphviz/globals.h:78: warning: type defaults to `int' in 
declaration of `IMAP_CodeGen'
/usr/local/include/graphviz/globals.h:78: warning: type defaults to `int' in 
declaration of `CMAP_CodeGen'
/usr/local/include/graphviz/globals.h:78: warning: type defaults to `int' in 
declaration of `CMAPX_CodeGen'
/usr/local/include/graphviz/globals.h:78: warning: type defaults to `int' in 
declaration of `MIF_CodeGen'
/usr/local/include/graphviz/globals.h:79: warning: type defaults to `int' in 
declaration of `XDot_CodeGen'
/usr/local/include/graphviz/globals.h:79: warning: type defaults to `int' in 
declaration of `MP_CodeGen'
/usr/local/include/graphviz/globals.h:79: warning: type defaults to `int' in 
declaration of `PIC_CodeGen'
/usr/local/include/graphviz/globals.h:79: warning: type defaults to `int' in 
declaration of `PS_CodeGen'
/usr/local/include/graphviz/globals.h:80: warning: type defaults to `int' in 
declaration of `DIA_CodeGen'
/usr/local/include/graphviz/globals.h:80: warning: type defaults to `int' in 
declaration of `SVG_CodeGen'
/usr/local/include/graphviz/globals.h:80: warning: type defaults to `int' in 
declaration of `VRML_CodeGen'
/usr/local/include/graphviz/globals.h:80: warning: type defaults to `int' in 
declaration of `VTX_CodeGen'
/usr/local/include/graphviz/globals.h:80: warning: data definition has no type 
or storage class
In file included from /usr/local/include/graphviz/render.h:55,
                 from common.h:20,
                 from RgraphvizInit.c:1:
/usr/local/include/graphviz/gvrender.h:12: warning: ignoring #pragma 
prototyped
In file included from /usr/local/include/graphviz/gvrender.h:19,
                 from /usr/local/include/graphviz/render.h:55,
                 from common.h:20,
                 from RgraphvizInit.c:1:
/usr/local/include/graphviz/gvrenderint.h:12: warning: ignoring #pragma 
prototyped
In file included from common.h:21,
                 from RgraphvizInit.c:1:
/usr/local/include/graphviz/graph.h:11: warning: ignoring #pragma prototyped
In file included from common.h:24,
                 from RgraphvizInit.c:1:
/usr/local/include/graphviz/adjust.h:11: warning: ignoring #pragma prototyped
make: *** [RgraphvizInit.o] Error 1
ERROR: compilation failed for package 'Rgraphviz'
** Removing '/usr/local/lib/R/site-library/Rgraphviz'