[BioC] how to remove unwanted spots from topTable output?

Marcelo Luiz de Laia mlaia at fcav.unesp.br
Fri May 7 20:21:15 CEST 2004

Dear Dennis,

I has the some problem yasterday and I fix it with a sub set.

I group this blank in the end of the data file.

For example, from 1 to 2576 genes I have the "true" data. From 2577 to 2898 I have the blank genes.

When I execute the limma commands, I sub set it. 

MA<-normalizeWithinArrays(RG, layout)

I dont known if this is the best way for this, but, for me, it solve my problem, I think. My excuses if it is wrong.

Hope this help


Em Fri, 07 May 2004 10:46:49 -0700
Dennis Hazelett <hazelett at uoneuro.uoregon.edu> escreveu:

DH> I have a class of spots on my arrays called "blank" that I would like to 
DH> remove from topTable output. I didn't see an easy way to do this in any 
DH> of the options.
DH> --Dennis

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