[BioC] installation problems of affy package
Toralf Kirsten
tkirsten at izbi.uni-leipzig.de
Thu May 6 12:57:17 CEST 2004
Hi,
we use R 1.9.0 on a x86 machine with Fedore Linux and want to install
the bioc package by calling the installation script getBioC() directly
within R as described on R-Project homepage.
But the affy package installation terminates when the install routine
tries to install the help documents.
The same error occurs when I try it manually by calling
> a <- CRAN.packages(CRAN=getOption("BIOC"))
> install.packages("affy", .libPaths()[1], available=a,
CRAN=getOption("BIOC"))
error message:
...
normalize.contrast text html latex example
normalize.invariantset text html latex
ERROR: command (e.g. \url) inside \link
ERROR: building help failed for package 'affy'
** Removing '/usr/lib/R/library/affy'
Unfortunately, I couldn't find something in the mailing list archive.
Is anybody out there who knows what I can do?
Tori
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