[BioC] GO and Annotation
jzhang at jimmy.harvard.edu
Mon May 3 21:57:50 CEST 2004
>Error in get(x, envir, mode, inherits) : variable "GO:0050983" was not
For any platfoem specific data packages built using ABPkgBuilder, the above may
occur due to two reasons:
1. The data sources used to build the platform specific package (e. g. mu11KsubA
in this case) and the GO package are off sync (e. g. built at different times)
so that GO ids that are found in one package may not exist in the other.
2. Alias GO ids (GO ids that become alias of primary GO ids due to merges) are
used by the source data used to build the platform specific data package. We are
in the process of improving the GO package so that alias GO ids can be better
>  "Probe" "Symbol" "Description"
>  "Function" "Chromosome" "Chromosome Location"
>  "GenBank" "LocusLink" "Cytoband"
> "UniGene" "PubMed" "Gene Ontology"
>It works OK when you eliminate the GO column:
>Did I make a mistake in the building procedure or it is something
>related with the internal extructure of GO package??
>Bioconductor mailing list
>Bioconductor at stat.math.ethz.ch
Department of Biostatistics
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084
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