[BioC] Problems with packages: annaffy, GO, KEGG, golubEsets

[Vitalina Komashko]

Hello All! 
I'm running R-2.0.1 and I tried to download and install annaffy, KEGG,
GO, golubEsets packages, but it seems to be a problem. Here is an
exact mesage:
 
Loading required package: reposTools 
[1] TRUE 
Error in library(package, character.only = TRUE, logical = TRUE, warn.conflicts 
= warn.conflicts,  : 
        'affydata' is not a valid package -- installed < 2.0.0? 
Execution halted 
/usr/local/lib/R/bin/INSTALL: line 1:  6558 Broken pipe            
cat "/usr/lo
cal/lib/R/library/affyPLM/R/affyPLM" 
ERROR: execution of package source for 'affyPLM' failed 
** Removing '/usr/local/lib/R/library/affyPLM' 
** Restoring previous '/usr/local/lib/R/library/affyPLM' 
[1] "Attempting to download annaffy from
http://www.bioconductor.org/repository/
release1.5/package/Source" 
[1] "Download complete." 
[1] "Installing annaffy" 
* Installing *source* package 'annaffy' ... 
** R 
** data 
** inst 
** save image 
[1] TRUE 
Loading required package: Biobase 
Loading required package: tools 
Welcome to Bioconductor 
         Vignettes contain introductory material.  To view, 
         simply type: openVignette() 
         For details on reading vignettes, see 
         the openVignette help page. 
Loading required package: GO 
Loading required package: KEGG 
Error in library(pkg, character.only = TRUE, logical = TRUE, lib.loc = lib.loc) 
: 
        'KEGG' is not a valid package -- installed < 2.0.0? 
Execution halted 
/usr/local/lib/R/bin/INSTALL: line 1:  6663 Broken pipe            
cat "/usr/lo
cal/lib/R/library/annaffy/R/annaffy" 
ERROR: execution of package source for 'annaffy' failed 
** Removing '/usr/local/lib/R/library/annaffy' 
** Restoring previous '/usr/local/lib/R/library/annaffy' 
[1] "Attempting to download edd from
http://www.bioconductor.org/repository/rele
ase1.5/package/Source" 
[1] "Download complete." 
[1] "Installing edd" 
* Installing *source* package 'edd' ... 
** R 
** inst 
** save image 
[1] TRUE 
Loading required package: golubEsets 
Error in library(pkg, character.only = TRUE, logical = TRUE, lib.loc = lib.loc) 
: 
        'golubEsets' is not a valid package -- installed < 2.0.0? 
Execution halted 
/usr/local/lib/R/bin/INSTALL: line 1:  6752 Broken pipe            
cat "/usr/lo                                           
cal/lib/R/library/edd/R/edd"
ERROR: execution of package source for 'edd' failed 
** Removing '/usr/local/lib/R/library/edd' 
** Restoring previous '/usr/local/lib/R/library/edd' 
>From URL:  http://www.bioconductor.org/repository/release1.5/package/Source 
        affyPLM version 1.2.5 
        annaffy version 1.0.11 
        edd version 1.5.0 
 
You have downloaded a default set of packages. 
If you wish to see other download options, please go to the URL: 
http://www.bioconductor.org/faq.html#getBioC 
Warning messages: 
1: Installation of package affyPLM had non-zero exit status in:
installPkg(fileN                                            ame, pkg,
pkgVer, type, lib, repEntry, versForce)
2: Installation of package annaffy had non-zero exit status in:
installPkg(fileN                                            ame, pkg,
pkgVer, type, lib, repEntry, versForce)
3: Installation of package edd had non-zero exit status in:
installPkg(fileName,                                             pkg,
pkgVer, type, lib, repEntry, versForce)
 
What can I do? 
Thank you very much for your help. 
Vitalina.