[BioC] AnnBuilder: sourceURLs not found error

[John Zhang]

>I'm running R 1.9.1 on Windows 2000 and tried to test some of the code in 
>the AnnBuilder (1.4.2) package from the vignette.
>I'm encountering an error, which I'm not clear on how to fix. Code and 
>error are copied below. Note that I've tried to run the same code on Linux 
>(R version 1.9.0) and got the same error.
>Any advice on this?

I just noticed this bug and will have it fixed today. Thanks.


>Thanks,
>Elisabetta
>
>---
>> myBase<-file.path(.path.package("AnnBuilder"), "data", "thgu95a")
>> myBaseType<-"gb"
>> 
mySrcUrls<-c(LL="http://www.bioconductor.org/datafiles/wwwsources/Tll_tmpl.gz", 
>UG="http://www.bioconductor.org/datafiles/wwwsources/Ths.data.gz", 
>GO="http://www.bioconductor.org/datafiles/wwwsources/Tgo.xml")
>> ABPkgBuilder(baseName=myBase, srcUrls=mySrcUrls, baseMapType=myBaseType, 
>pkgName="myPkg", pkgPath="C:\tmp", organism="human", makeXML=F)
>[1] "It may take me a while to process the data. Be patient!"
>Error in url(sourceURLs[["GO"]], open = "r") :
>         Object "sourceURLs" not found
>---
>
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Jianhua Zhang
Department of Biostatistics
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084