[BioC] RefSeq Entries

[Ranga Chari]

Hello Group, 
 How can I get RefSeq accession IDs instead of LocusLink IDs. 
 
>get("1000_at", env=hguav2LOCUSID)
[1] 5595 

Instead of one single probe, how can I get all 12,625  in RefSeq accession ID for hguav952.
 
env=hguav2REFSEQ isnt working.
 
Please help. 
 
Thank you.
 

Robert Baertsch <baertsch at soe.ucsc.edu> wrote:
While you are at it, can you please allow people to install R without 
being root? Our sysadmin will install only RPMs and since bioconductor 
has no RPMS, all of the R users need to compile the source for R.

It is a real pain and many long time R users are frustrated by it. What 
do you guys have to do something special? Every other unix app in the 
world has an RPM.

RPM good.
installation scripts bad.

Get the picture.

Jeff Gentry wrote:

>>I've gotten this error a few times. Each time I rerun getBioC("exprs") , 
>>it get past it and then it happens again.
>> 
>>
>
>Yes ... I've gotten a rash of these reports, have not been able to
>personally reproduce it. Originally the first couple of people were using
>Mac OS X, so thought it was a problem specific to that OS, but now have a
>few people using Win32 and Unix machines. I'm a bit baffled as everyone
>is using release side stuff, and nothing should have changed there, but
>clearly something is not right. Will let folks know ASAP when I figure
>something out.
>
>Thanks
>-J
> 
>

_______________________________________________
Bioconductor mailing list
Bioconductor at stat.math.ethz.ch
https://stat.ethz.ch/mailman/listinfo/bioconductor

		
---------------------------------


	[[alternative HTML version deleted]]