[BioC] ABPkgBuilder question

[John Zhang]

Could you also tell me which version of AnnBuilder (release or devel) you have?


Jianhua

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>From: Sean Davis <sdavis2 at mail.nih.gov>
>Date: Wed, 18 Aug 2004 09:04:49 -0400
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>Subject: [BioC] ABPkgBuilder question
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>All,
>
>I am building a data package from locuslink Ids (about 27000 of them).   
>I get the following warning message followed by MANY warnings about NAs  
>introduced by coercion.  I then get an error message:
>
>ABPkgBuilder(baseName="probe2ll.human.txt",srcUrls=  
>getSrcUrl("all","human"),baseMapType="ll",pkgName="qhPkg",pkgPath="/ 
>Users/sdavis/Work/DataPackages/qiagen")
>Warning: data length [412710] is not a sub-multiple or multiple of the  
>number of rows [29480] in matrix
>....
>Warning: NAs introduced by coercion
>Error in assign(x[i], value[[i2]], envir = envir, inherits = inherits) :
>	symbol print-name too long
>
>Any ideas?
>
>Here is an excerpt of my base file:
>
> > read.table("probe2ll.human.txt")
>               V1     V2
>1     H200000001     10
>2     H200000002    125
>3     H200000005   7051
>4     H200000006   2235
>5     H200000007   2731
>6     H200000008   2206
>7     H200000010   4049
>8     H200000011     38
>9     H200000012   1088
>10    H200000014   5724
>11    H200000016   5277
>
>Thanks,
>Sean
>
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Jianhua Zhang
Department of Biostatistics
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084