[BioC] ABPkgBuilder question

[Sean Davis]

All,

I am building a data package from locuslink Ids (about 27000 of them).   
I get the following warning message followed by MANY warnings about NAs  
introduced by coercion.  I then get an error message:

ABPkgBuilder(baseName="probe2ll.human.txt",srcUrls=  
getSrcUrl("all","human"),baseMapType="ll",pkgName="qhPkg",pkgPath="/ 
Users/sdavis/Work/DataPackages/qiagen")
Warning: data length [412710] is not a sub-multiple or multiple of the  
number of rows [29480] in matrix
....
Warning: NAs introduced by coercion
Error in assign(x[i], value[[i2]], envir = envir, inherits = inherits) :
	symbol print-name too long

Any ideas?

Here is an excerpt of my base file:

 > read.table("probe2ll.human.txt")
               V1     V2
1     H200000001     10
2     H200000002    125
3     H200000005   7051
4     H200000006   2235
5     H200000007   2731
6     H200000008   2206
7     H200000010   4049
8     H200000011     38
9     H200000012   1088
10    H200000014   5724
11    H200000016   5277

Thanks,
Sean