[BioC] GO annotation problem

John Zhang jzhang at jimmy.harvard.edu
Thu Apr 22 23:00:15 CEST 2004


>library(annaffy)
>library(affy)
>load('mydata')
>anncols<-aaf.handler()[c(1:4,7:8, 12:13)]
>anntable<-aafTableAnn(geneNames(mydata.gcrma)[1:100],'hgu133a',anncols)
>saveHTML(anntable[1:100],'lixo.html')

What is the version number of the hgu133a data package? annaffy may have 
probelem with data package >= 1.5.0 due to changes in the structure of the GO 
environment.

>
>Does somebody have any idea what it is going on ? Please!
>
>platform i686-pc-linux-gnu
>arch     i686
>os       linux-gnu
>system   i686, linux-gnu
>status   beta
>major    1
>minor    9.0
>year     2004
>month    03
>day      22
>language R
>
>
>-- 
>Mayte Suarez Farinas
>The Rockefeller University
>1230 York Avenue, Box 212
>New York, NY 10021
>phone: 1-212-327-8186
>fax:   1-212-327-7422
>
>_______________________________________________
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Jianhua Zhang
Department of Biostatistics
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084



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