[BioC] Problems accessing the Milan package through the vignettes Explorer

John Zhang jzhang at jimmy.harvard.edu
Thu Jun 12 11:54:26 MEST 2003


After downloading the package, you have to install the package as you do with 
any R packages before using vExplorer. Have you done that?

>From: Fátima Núñez <fnunez at usal.es>
>To: <Bioconductor at stat.math.ethz.ch>
>Date: Thu, 12 Jun 2003 13:46:30 +0200
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>Subject: [BioC] Problems accessing the Milan package through the vignettes 
Explorer
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>
>Hello all,
>
>I am currently trying to install the Milan BioC course info and packages
>and I seem to be having a problem when trying to access the Milan
>package through the vignettes Explorer. Installation has been done with
>no error messages as instructed by the
>http://www.bioconductor.org/workshops/Milan/milan.html page.
>
>Also as instructed I type:
>
>> library(tkWidgets)
>Loading required package: Biobase 
>Welcome to Bioconductor 
>         Vignettes contain introductory material.  To view, 
>         simply type: openVignette() 
>         For details on reading vignettes, see
>         the openVignette help page.
>Creating a new generic function for "summary" in package 
>reposTools 
>
>Synching your local package management information ...
>Loading required package: widgetTools 
>> library(Milan)
>> vExplorer()
>Loading required package: tools 
>Loading required package: DynDoc 
><Tcl>  
>
>The problem arises when I the vignettes Explorer opens. The only
>packages that appear in the list are the following:
>
>
>affy, affycomp, affydata, AnnBuilder, annotate, Biobase, edd,
>genefilter, geneplotter, graph, hexbin, makecdfenv, marrayClasses,
>marrayInput, marrayNorm, marrayPlots, marrayTools, multtest, reposTools,
>ROC, SAGElyzer, tkWidgets, vsn and widgetTools
>
>
>and Milan is nowhere to be seen!
>
>
>Any ideas/suggestions? Am I doing something wrong? Has anybody else
>encountered this problem?
>
>Many thanks,
>
>Fátima
>
>_______
>Fátima Núñez, PhD
>Centre for Cancer Research (CIC)
>University of Salamanca-CSIC
>Campus Unamuno
>37007 Salamanca                                                   
>Spain
>Phone: + 34 923 294802
>Fax:     + 34 923 294743
>E-mail: fnunez at usal.es
>
>_______________________________________________
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>Bioconductor at stat.math.ethz.ch
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Jianhua Zhang
Department of Biostatistics
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084



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