[BioC] Problem using make.cdf.env

[James MacDonald]

I contributed the envs to Bioconductor yesterday, so they will probably
be on the website soon. I also emailed the win env to Paul. Anybody else
who needs the env in the meantime can send me an email.

Also, note that DOS is case insensitive, so it doesn't matter if you
capitalize or not.

Jim



James W. MacDonald
UMCCC Microarray Core Facility
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623

>>> ririzarr at jhsph.edu 06/10/03 10:40PM >>>
another alternative is to contribute the package to bioconductor and
they
will automatically make the windows binary.

On Tue, 10 Jun 2003, Wenqiong Chen wrote:

> You would need some additional tools to get it working. One is
> "http://www.stats.ox.ac.uk/pub/Rtools/tools.zip". Another one is
> "http://prdownloads.sourceforge.net/mingw/MinGW-2.0.0-3.exe" and this
is the
> correct compiler we are supposed to use. 
> Follow the instruction at  http://www.stats.ox.ac.uk/pub/Rtools/. I
got it
> working successfully with our custom cdf files. 
> In case it is a mistypo, the command in DOS should be Rcmd INSTALL
> rae230acdf. This first R should be capitalized. 
> wenqiong
> 
> -----Original Message-----
> From: Paul Boutros [mailto:pcboutro at engmail.uwaterloo.ca] 
> Sent: Tuesday, June 10, 2003 2:35 PM
> To: bioconductor at stat.math.ethz.ch 
> Subject: [BioC] Problem using make.cdf.env
> 
> 
> Hi all,
> 
> I'm following the directions at: 
> http://www.bioconductor.org/repository/devel/vignette/makecdfenv.pdf

> to try to make a CDF for the RAE230A chip, and running into some
troubles.  
> Running make.cdf.env itself works fine, but when I try to install it
with
> rcmd INSTALL rae230acdf
> from a DOS prompt I get the error:
> 
> 'make' is not recognized as an internal or external command,
> operable program or batch file.
> *** Installation of rae230acdf failed ***
> 
> That's a reasonable error, as I do not have a C-compiler available to
me.
> Do I 
> have any work-arounds or other options to get this working, or am I
pretty
> well 
> stuck?
> 
> Paul
> 
> OS: win2k (SP3)
> R:  1.7.0
> BioConductor 1.2
> 
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