[BioC] BUG : mistype in xy2indices, affy version 1.2.27

[Laurent Gautier]

The typo only existed for a short time..
 it was fixed before the release...
... strange...
http://franz.stat.wisc.edu/cgi-bin/viewcvs.cgi/Rpacks/affy/R/xy2indices.R?rev=1.3&cvsroot=Bioconductor&content-type=text/vnd.viewcvs-markup



note: the typo is the error message is still there. It will be fixed...


Thanks,



L.



On Tue, Jun 10, 2003 at 05:59:46PM +0200, Pierre-yves Boëlle wrote:
> In package affy version 1.2.27, there is a mistype error in the code of xy2indices :
> 
> function (x, y, nr = NULL, cel = NULL, abatch = NULL) 
> {
>     if (any(x <= 0) || any(y <= 0)) 
>         stop("Xs and Ys must start at 1 (please refer to the help file) !")
> 
> /* ***nc*** should be ***nr*** */
>     ct <- sum(c(is.null(nc), is.null(cel), is.null(abatch)))
>                                 ^^^
> 
>     if (ct != 2) 
> /* and here again */
>         stop("One and only one of 'nc', 'cel', 'abatch' should be specified.")
>                                                 ^^^
> 
> 
>     if (!is.null(cel)) 
>         nr <- nrow(intensity(cel))
>     if (!is.null((abatch))) 
>         nr <- nrow(abatch)
>     return(x + nr * (y - 1))
> }
> 
> Sorry if this is a known/fixed issue.
> 
> PYBoelle
> FdM StAntoine
> PARIS
> 	[[alternate HTML version deleted]]
> 
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