[BioC] Invalid "marrayInfo" object

Rob Dunne Rob.Dunne at csiro.au
Mon Jul 28 20:26:26 MEST 2003



Hi list,
    on a new installation of R (1.7.1) I am getting an
error on stuff that used to work. This reproduces it
with the zebrafish example


options(CRAN = "http://mirror.aarnet.edu.au/pub/CRAN/")
update.packages()
source("http://www.bioconductor.org/getBioC.R")
getBioC()
#all new installation


library(marrayInput)
datadir <- system.file("data", package="marrayInput")

>  swirl.gnames <- read.marrayInfo(file.path(datadir, "fish.gal"),
+                                      info.id=4:5, labels=5, skip=21)
Error in validObject(.Object) : Invalid "marrayInfo" object: 
Invalid object for slot "maInfo" in class "marrayInfo": 
got class "NULL", should be or extend class "data.frame"


			    any ideas?

					bye
					rob


platform i686-pc-linux-gnu
arch     i686
os       linux-gnu
system   i686, linux-gnu
status
major    1
minor    7.1
year     2003
month    06
day      16
language R

-- 
Rob Dunne         Fax: +61 2 9325 3200     Tel: +61 2 9325 3263
CSIRO Mathematical and Information Sciences     +61 2 9325 3100
Locked Bag 17, North Ryde, New South Wales, Australia, 1670         
http://matilda.vu.edu.au/~dunne  Email: Rob.Dunne at csiro.au

        Java has certainly revolutionized marketing and litigation.



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