[BioC] Invalid "marrayInfo" object
Rob Dunne
Rob.Dunne at csiro.au
Mon Jul 28 20:26:26 MEST 2003
Hi list,
on a new installation of R (1.7.1) I am getting an
error on stuff that used to work. This reproduces it
with the zebrafish example
options(CRAN = "http://mirror.aarnet.edu.au/pub/CRAN/")
update.packages()
source("http://www.bioconductor.org/getBioC.R")
getBioC()
#all new installation
library(marrayInput)
datadir <- system.file("data", package="marrayInput")
> swirl.gnames <- read.marrayInfo(file.path(datadir, "fish.gal"),
+ info.id=4:5, labels=5, skip=21)
Error in validObject(.Object) : Invalid "marrayInfo" object:
Invalid object for slot "maInfo" in class "marrayInfo":
got class "NULL", should be or extend class "data.frame"
any ideas?
bye
rob
platform i686-pc-linux-gnu
arch i686
os linux-gnu
system i686, linux-gnu
status
major 1
minor 7.1
year 2003
month 06
day 16
language R
--
Rob Dunne Fax: +61 2 9325 3200 Tel: +61 2 9325 3263
CSIRO Mathematical and Information Sciences +61 2 9325 3100
Locked Bag 17, North Ryde, New South Wales, Australia, 1670
http://matilda.vu.edu.au/~dunne Email: Rob.Dunne at csiro.au
Java has certainly revolutionized marketing and litigation.
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