[BioC] rae230a/b data packages buggy?

[John Zhang]

I will.

>Date: Mon, 25 Aug 2003 18:57:46 +0200
>From: Claudio Lottaz <Claudio.Lottaz at molgen.mpg.de>
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>To: John Zhang <jzhang at jimmy.harvard.edu>
>Subject: Re: [BioC] rae230a/b data packages buggy?
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>That's great news, thanks for the effort.
>It would be great if you could tell me or the
>list when the corrected data package
>becomes available.
>Claudio
>
>John Zhang wrote:
>
>>I have found the bug. We are using an unified approach to get mappings between 
>>probe ids and LocusLink ids. Some of the probe ids that do not get mapped to a 
>>LocusLink id by any of the sources used were somehow mapped to LocusLink id 
"1". 
>>Thus, mappings for probes that are mapped to LocusLink id "1" are incorrect. 
>>Other mappings seem to be correct base on my limited checking results. 
>>
>>I will fix the bug and have the correct data packages built as soon as I can. 
>>Sorry for the error.
>>
>> 
>>  
>>
>>>Subject: Re: [BioC] rae230a/b data packages buggy?
>>>From: Reinhold Koch <reinhold.koch at unibas.ch>
>>>To: Claudio Lottaz <Claudio.Lottaz at molgen.mpg.de>
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>>  
>>
>>>Hi Claudio,
>>>
>>>I found the same problems with rae230a.
>>>
>>>Reinhold
>>>On Sun, 2003-08-24 at 18:46, Claudio Lottaz wrote:
>>>    
>>>
>>>>Hi all,
>>>>I am trying to analyze data from the affy-chips rae230a and rae230b.
>>>>Analysis seems to be ok but the annotation using annaffy and rae230a/b
>>>>data packages 1.3.0 looks wrong. E.g. the rae230aSYMBOL environment
>>>>holds the symbol A1BG for most of the affy ids. Does anybody have an
>>>>idea what is going wrong?
>>>>Claudio
>>>>      
>>>>
>>>-- 
>>>Reinhold Koch <reinhold.koch at unibas.ch>
>>>
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>>>
>>
>>Jianhua Zhang
>>Department of Biostatistics
>>Dana-Farber Cancer Institute
>>44 Binney Street
>>Boston, MA 02115-6084
>>
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>>  
>>
>
>
>-- 
>----------------------------------------------------------------------
>Claudio Lottaz
>Max Planck Institute for Molecular Genetics
>Computational Molecular Biology Department
>Ihnestrasse 73, D-14195 Berlin (Germany)
>
>phone: +49 (0)30 8413 1177
>  fax: +49 (0)30 8413 1176
>  www: http://www.molgen.mpg.de/~lottaz
>
>

Jianhua Zhang
Department of Biostatistics
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084