[Bioc-sig-seq] ABout how to trim out the adaptor of soleax short data!

[Hongtao Hu]

Hey, dear all,
The adapotor in our dataset seems variable. Usually, how should it be trimmed out or which software would be used?
The length of 3' and 5' adapotr are sperately over 20 nt, but the total length of reads is 39 nt.  I wondering if Anyone who ever did the similar job can share your experience? Appreciate!


Bests,
Hongtao Hu
Department of Biological Sicences
Auburn University
Auburn, Al 36832
cell phone: 334-524-7282
Hongtao webpage: http://www.auburn.edu/~hzh0005/