[Bioc-sig-seq] Suggest enhancement in GRanges: add method setAs("Granges", "IntervalTree")

Steve Lianoglou mailinglist.honeypot at gmail.com
Wed Aug 4 03:48:01 CEST 2010

On Tue, Aug 3, 2010 at 9:45 PM, Michael Lawrence
<lawrence.michael at gene.com> wrote:
> The problem is that IntervalTree will not respect the separation of
> spaces/chromosomes. Any time you call ranges() on a GRanges, you lose that
> information.

Ah ... indeed. I guess it's now obvious that I (almost) always work on
the chromosome-at-a-time level ... :-)


Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact

More information about the Bioc-sig-sequencing mailing list