[Bioc-sig-seq] SOLID data

[nicolas servant]

Dear List,

Does anybody have ever try to analyse some SOLID data using Biostrings 
and ShortRead ?? or anything else !
The ShortRead package was developped to manipulate short reads from 
Solexa, 454, Helicos or SOLiD (cf vignette), but in practice, it seems 
to be more complicated ... the input are different from Solexa of 
course, and we have to deal with the color code ...
Does anybody have some experience with this data ? especially for the 
adaptor removal ?

Thanks,
Nicolas

-- 
Nicolas Servant
Equipe Bioinformatique
Institut Curie
26, rue d'Ulm - 75248 Paris Cedex 05 - FRANCE

Email: Nicolas.Servant at curie.fr
Tel: 01 56 24 69 85
http://bioinfo.curie.fr/