[Bioc-devel] C++ compiler error on kunpeng2 ?

[Martin Grigorov]

Hi,

I’ll check which package needs to be installed to provide libtbbmalloc!

On Mon, 10 Mar 2025 at 13:19, Katja Danielzik <
katja.danielzik using stud.uni-due.de> wrote:

> Dear all,
>
> i have noticed that my package "MetaboDynamics" which employs stan
> models ,that are pre-compiled to C++ during installation, fails to
> install on kunpeng2 (and only there) with the following error message:
>
> /usr/bin/ld: cannot find -ltbbmalloc: No such file or directory
> collect2: error: ld returned 1 exit status
> make: *** [/home/biocbuild/R/R/share/make/shlib.mk:10: MetaboDynamics.so]
> Error 1
> ERROR: compilation failed for package ‘MetaboDynamics’
> * removing
> ‘/home/biocbuild/R/R-devel_2025-02-19/site-library/MetaboDynamics’
>
> The same error exists for the packages "IgGeneUsage" and "ClustIRR"
> which also contain stan models that are compiled to C++.
>
> Might it be that the C++ compiler has an error or something is not
> installed properly on the kunpeng2 VM?
>
> Best,
>
> Katja Danielzik
>
> --
> PhD Student
> AG Bioinformatics and Computational Biophysics
> University of Duisburg-Essen
> Tel: +49 201 183 4265
> e-mail:katja.danielzik using uni-due.de
>
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