[Bioc-devel] possible ExperimentHub cache problem in the BBS with gDNAx

[Robert Castelo]

Hi,

I received the notice below about gDNAx devel failing in linux, here's 
the report:

https://bioconductor.org/checkResults/devel/bioc-LATEST/gDNAx/nebbiolo2-buildsrc.html

the error seems to have something to do with loading data from the cache 
of the ExperimentHub when building the vignette. It does not happen in 
linux-aarch64 or in any other platform, and in release gives a similar 
error, but on the Windows platform:

https://bioconductor.org/checkResults/3.21/bioc-LATEST/gDNAx/palomino7-buildsrc.html

while for linux and every other platform builds fine. This has been 
happening since we switched to the new release, I tried to bump the 
version in both, devel and release, but the error in these two specific 
platforms remains. Could we try to reset somehow the ExperimentHub cache 
in these two platforms for gDNAx? of course, if you have any other 
suggestion that I can try, please let me know.

thanks!

robert.

-------- Forwarded Message --------
Subject: 	gDNAx Bioconductor package
Date: 	Fri, 20 Jun 2025 09:53:09 -0400
From: 	CoreTeam Bioconductor <bioconductorcoreteam using gmail.com>
To: 	robert.castelo using upf.edu



Hello Package Maintainer,

We would like to bring to your attention that your package is failing in 
devel across all linux. This is very problematic. Please investigate the 
issues and fix the package to avoid deprecation.

https://bioconductor.org/checkResults/devel/bioc-LATEST/

If you have further questions or concerns please reach out on the 
bioc-devel using r-project.org

We appreciate your quick attention to this matter

Cheers,
On behalf of the Bioconductor Core Team

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