[Bioc-devel] hiReadsProcessor Bioconductor package

[Kern, Lori]

Thank you for your response.  I can assist with deprecation.   Thank you for letting us know.

Cheers,


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Nirav Malani <malnirav using gmail.com>
Sent: Friday, June 20, 2025 10:31 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>; Kern, Lori <Lori.Shepherd using RoswellPark.org>
Subject: Re: [Bioc-devel] hiReadsProcessor Bioconductor package

Hi Lori,

Not sure what happened in the last reply.

I was reaching out to discuss possibility to flag this package as “archived” or deprecated. I don’t have time to support this package anymore and don’t think there are any active users who will benefit from this software given other advanced package now available on BioC.

Best,
Nirav Malani
On Jun 20, 2025 at 10:28 AM -0400, Kern, Lori <Lori.Shepherd using roswellpark.org>, wrote:
It looks like this is an empty message?

Based on the title:  It looks like your package has been failing in devel.
https://bioconductor.org/checkResults/devel/bioc-LATEST/hiReadsProcessor/<https://secure-web.cisco.com/1f_ZisNQqAYh-wGlIOEz5TwPPjxHe1P5LvWTeTVkWGxqtyp9J5xLTPp6FKMivmn91z7IPkcFaFeetkWAQi27zbPi2mNP55KbPC99VUHjKei8mYQsmL6iOUwRMnK0pz0kwJioJ0_ihe63Nv2fD9Ei1FKMx233kpXCqdUtlR8dVcNF71Us3GXDq8r7Ej6Wj5KD6CziKchdHK6QMGy5_rkhT4l_HLQxvlMDk-bBkSOhAumerqiRYwlC808keVEtu6lQ8l1J5OTSnRp1PCGx_VIrSfBzcwlwqw7G6zpCpChPqDpsIChC9piJGCUrLoJE0ofcR/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2FhiReadsProcessor%2F>

The error message gives instructions on how to resolve the error.

Let us know if you need further assistance



Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of malnirav using gmail.com <malnirav using gmail.com>
Sent: Friday, June 20, 2025 10:23 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] hiReadsProcessor Bioconductor package


_______________________________________________
Bioc-devel using r-project.org mailing list
https://secure-web.cisco.com/1Qt2ml6YiStQt_SfLtTE6vqy2OjqKlOyFdBplYGkRqY5OpeQETM6GCcHz92o-RyJT8KuyNbY2GFJMQN4IVooZtDVn7LZwNvbVw6alFzTWarr2yPWRGIfijBxQCytTig4pkkBdWG1498qOtW_RWqlf9RcNCo3a5X5BSkFBUtqUm4YJd86VnsLmETEtaa7PBrbI2wzwxqFWfoZIyjxR5d98cEPI-TGVvKX2nYGjHKnPrzq4h8p6y2bPvrTTkbm6dSYQJzriFZqN3nmM8UlZWEMkAa7hG9qoIVwNpT_8c1zMCsZlm9IgBa8haD5Ln8mJn5fa/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel


This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.


This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
	[[alternative HTML version deleted]]