[Bioc-devel] [EXTERNAL] Re: DeepTarget error built in Linux (openEuler 22.03 LTS-SP1) / aarch64

[Nguyen, Trinh (NIH/NCI) [C]]

Thanks Martin,
Trinh

From: Martin Grigorov <martin.grigorov using gmail.com>
Date: Friday, October 25, 2024 at 12:04 PM
To: Nguyen, Trinh (NIH/NCI) [C] <tinh.nguyen using nih.gov>
Cc: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [EXTERNAL] Re: [Bioc-devel] DeepTarget error built in Linux (openEuler 22.03 LTS-SP1) / aarch64
Hi,

This has been fixed earlier today.
It should be OK in the next run (tomorrow).

Regards,
Martin

On Fri, 25 Oct 2024 at 17:47, Nguyen, Trinh (NIH/NCI) [C] via Bioc-devel <bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>> wrote:

Dear Developers,

Could you please guide me what I should do? I received an error for the OS Linux (openEuler 22.03 LTS-SP1) / aarch64 as below:
https://bioconductor.org/checkResults/3.20/bioc-LATEST/DeepTarget/palomino8-buildsrc.html

* installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’
* installing *source* package ‘DeepTarget’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error in dyn.load(file, DLLpath = DLLpath, ...) :
  unable to load shared object '/home/biocbuild/R/R-4.4.1/site-library/BiocParallel/libs/BiocParallel.so':
  /usr/lib64/libstdc++.so.6: version `CXXABI_1.3.15' not found (required by /home/biocbuild/R/R-4.4.1/site-library/BiocParallel/libs/BiocParallel.so)
Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
ERROR: lazy loading failed for package ‘DeepTarget’
* removing ‘/home/biocbuild/R/R-4.4.1/site-library/DeepTarget’
* restoring previous ‘/home/biocbuild/R/R-4.4.1/site-library/DeepTarget’


Thanks for your help.

Best,

Trinh

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