[Bioc-devel] DeepTarget error built in Linux (openEuler 22.03 LTS-SP1) / aarch64

[Martin Grigorov]

Hi,

This has been fixed earlier today.
It should be OK in the next run (tomorrow).

Regards,
Martin

On Fri, 25 Oct 2024 at 17:47, Nguyen, Trinh (NIH/NCI) [C] via Bioc-devel <
bioc-devel using r-project.org> wrote:

>
> Dear Developers,
>
> Could you please guide me what I should do? I received an error for the OS
> Linux (openEuler 22.03 LTS-SP1) / aarch64 as below:
>
> https://bioconductor.org/checkResults/3.20/bioc-LATEST/DeepTarget/palomino8-buildsrc.html
>
> * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’
> * installing *source* package ‘DeepTarget’ ...
> ** using staged installation
> ** R
> ** data
> ** inst
> ** byte-compile and prepare package for lazy loading
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>   unable to load shared object
> '/home/biocbuild/R/R-4.4.1/site-library/BiocParallel/libs/BiocParallel.so':
>   /usr/lib64/libstdc++.so.6: version `CXXABI_1.3.15' not found (required
> by /home/biocbuild/R/R-4.4.1/site-library/BiocParallel/libs/BiocParallel.so)
> Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam
> -> dyn.load
> Execution halted
> ERROR: lazy loading failed for package ‘DeepTarget’
> * removing ‘/home/biocbuild/R/R-4.4.1/site-library/DeepTarget’
> * restoring previous ‘/home/biocbuild/R/R-4.4.1/site-library/DeepTarget’
>
>
> Thanks for your help.
>
> Best,
>
> Trinh
>
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>
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