[Bioc-devel] Kunpeng2 compilation error -lopenblas

[Morgan, Michael]

Wonderful, thanks for confirming Martin.

Best wishes
Mike

From: Martin Grigorov <martin.grigorov using gmail.com>
Date: Wednesday, 23 October 2024 at 09:42
To: Morgan, Michael <michael.morgan using abdn.ac.uk>
Cc: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] Kunpeng2 compilation error -lopenblas
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Hi,

This issue has been fixed earlier today.
It should be OK in the next build (tomorrow).

Regards,
Martin

On Wed, Oct 23, 2024 at 11:28 AM Morgan, Michael via Bioc-devel <bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>> wrote:
Hi Bioc team,
I’m the maintainer of miloR. I have a build compilation error on kunpeng2 on Bioc 3.20 related to missing openblas:

g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o miloR.so RcppExports.o computeMatrices.o fitGeneticPLGlmm.o fitPLGlmm.o inference.o invertPseudoVar.o multiP.o paramEst.o pseudovarPartial.o solveQP.o utils.o -lopenblas -L/usr/lib/gcc/aarch64-linux-gnu/10.3.1 -lgfortran -lm -fopenmp -L/home/biocbuild/R/R-4.4.1/lib -lR

/home/biocbuild/miniforge3/bin/../lib/gcc/aarch64-conda-linux-gnu/14.2.0/../../../../aarch64-conda-linux-gnu/bin/ld: cannot find -lopenblas:
No such file or directory
collect2: error: ld returned 1 exit status
make: *** [/home/biocbuild/R/R-4.4.1/share/make/shlib.mk:10<http://shlib.mk:10/>: miloR.so] Error 1
ERROR: compilation failed for package ‘miloR’

This error doesn’t come up on the other linux build servers, MacOS or Windows. Is this an issue with the configuration of the build server, or with the openEuler distro?

Thanks for your help.
Mike Morgan

Pronouns: He/Him
Lecturer
6.17, Institute of Medical Sciences
School of Medicine, Medical Sciences & Nutrition
University of Aberdeen
Foresterhill
Aberdeen
AB25 2ZD
Tel: 01224 437397
Web: https://www.morganlab.co.uk/


The University of Aberdeen is a charity registered in Scotland, No SC013683.
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The University of Aberdeen is a charity registered in Scotland, No SC013683.
Tha Oilthigh Obar Dheathain na charthannas clàraichte ann an Alba, Àir. SC013683.

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