[Bioc-devel] Kunpeng2 compilation error -lopenblas

[Martin Grigorov]

Hi,

This issue has been fixed earlier today.
It should be OK in the next build (tomorrow).

Regards,
Martin

On Wed, Oct 23, 2024 at 11:28 AM Morgan, Michael via Bioc-devel <
bioc-devel using r-project.org> wrote:

> Hi Bioc team,
> I’m the maintainer of miloR. I have a build compilation error on kunpeng2
> on Bioc 3.20 related to missing openblas:
>
> g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib
> -o miloR.so RcppExports.o computeMatrices.o fitGeneticPLGlmm.o fitPLGlmm.o
> inference.o invertPseudoVar.o multiP.o paramEst.o pseudovarPartial.o
> solveQP.o utils.o -lopenblas -L/usr/lib/gcc/aarch64-linux-gnu/10.3.1
> -lgfortran -lm -fopenmp -L/home/biocbuild/R/R-4.4.1/lib -lR
>
> /home/biocbuild/miniforge3/bin/../lib/gcc/aarch64-conda-linux-gnu/14.2.0/../../../../aarch64-conda-linux-gnu/bin/ld:
> cannot find -lopenblas:
> No such file or directory
> collect2: error: ld returned 1 exit status
> make: *** [/home/biocbuild/R/R-4.4.1/share/make/shlib.mk:10: miloR.so]
> Error 1
> ERROR: compilation failed for package ‘miloR’
>
> This error doesn’t come up on the other linux build servers, MacOS or
> Windows. Is this an issue with the configuration of the build server, or
> with the openEuler distro?
>
> Thanks for your help.
> Mike Morgan
>
> Pronouns: He/Him
> Lecturer
> 6.17, Institute of Medical Sciences
> School of Medicine, Medical Sciences & Nutrition
> University of Aberdeen
> Foresterhill
> Aberdeen
> AB25 2ZD
> Tel: 01224 437397
> Web: https://www.morganlab.co.uk/
>
>
> The University of Aberdeen is a charity registered in Scotland, No
> SC013683.
> Tha Oilthigh Obar Dheathain na charthannas clàraichte ann an Alba, Àir.
> SC013683.
>
>         [[alternative HTML version deleted]]
>
> _______________________________________________
> Bioc-devel using r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

	[[alternative HTML version deleted]]