[Bioc-devel] Having problems pushing changes to Bioconductor...

[Paul Brennan]

Dear Lori,
    Thanks for your prompt and helpful email.
    I think I've managed to make the necessary changes to stop the build
error.
    I think it did it quite manually changing my Github, the Bioconductor
dev code and the Bioconductor RELEASE_3_18 for drawProteins.
    The way I did it felt a bit hacky but I'm hoping it will work.
    I did have to set up new SSH - so thanks for the pointers for that too.
    If you have a moment and you can point me towards a resource that makes
it more obvious how to push code changes from Github -> dev -> release, I
would be grateful. I feel sure the advice is somewhere there and I just
don't understand it or utilise it properly.
    Well thanks again,
Paul

On Wed, Mar 6, 2024 at 2:23 PM Kern, Lori <Lori.Shepherd using roswellpark.org>
wrote:

> Could you please show the commands you are trying along with a
> git remote -v
>
>
> I've check the configuration on our end and everything looks correct.
> You'll need to make sure you are pointing to one of the uploaded ssh keys
> on the BiocCredentials account (or create a new one if you are on a
> different machine)
> There is useful information found at
>
> http://contributions.bioconductor.org/git-version-control.html#new-package-workflow
>
> and a FAQ section
> http://contributions.bioconductor.org/git-version-control.html#faq
> See especially: #13, #14, and#15
>
>
>
>
> Lori Shepherd - Kern
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ------------------------------
> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Paul
> Brennan <brennanpincardiff using gmail.com>
> *Sent:* Wednesday, March 6, 2024 9:00 AM
> *To:* bioc-devel using r-project.org <bioc-devel using r-project.org>
> *Subject:* [Bioc-devel] Having problems pushing changes to Bioconductor...
>
> Sorry to bother you I feel as if I am asking a very stupid question but I
> can't solve it on my own.
>
> I am getting build errors and I worked out why (a failed test) and changed
> my code on Github to correct this:
>
> https://secure-web.cisco.com/1C-fx1Fhx9rZfPJTM0FHB-mLGMfkL6M96AEW9fEr4L0xDKiuAu--2umi29DrHFpl_pWRTIjKBCcIalvMrcKCt2WFZENpLe4QuvKhgBOx9FOmJ1VkGT_u2Tv-bmbWgK1bzBmO2mPC6LF_ZnTpUJjRkDpIsTOP-BtsjhP3a6yGUvmLlwtIfo1lMUD4Gl1ipcUIn7CVHqgGN2GERwAMmnTyqjQtg2yb1035kNIfkRFrK8s40RCrbUytSiymWgBBR8Exk1s3xX51m2KFuuiCSEk9Bhc0bxKl3CUW_V5exgMKWeQS9aGPOCh6NCLMQ6kSbtKPF/https%3A%2F%2Fgithub.com%2Fbrennanpincardiff%2FdrawProteins
> I have checked R CMD Check and it is fine with no errors or warnings :-)
>
> Now it is time to try to push these onto Bioconductor but I can't do this.
> I've tried various sources and it seems the key point is that I haven't
> organised the correct access rights to push upstream.
>
> Can some one advise or point towards a resource that I can work with
> please?
>
> Thanks,
> Paul
>
> Paul Brennan
> package maintainer for drawProteins
>
> https://secure-web.cisco.com/1AJF0ylkW0LYxK_qOGPSaOg0tBDtXraJO8oy5e6dogibE4DF9ygkXszBgGnaEAuTrFGo8tVABQpcGRhBGJi9SSrdtEVRh8gBIMdRVbgktq3CMRZeMflbYC9d5e_qX0SnD0y2A9PnkuC6gdiIW369zhL3MSRmVe0PjaYJGksjmc8O6tGYJo5LVpBjWefmt_eKLvyGwCEaBKxAo6V8iytwL4fjjFWGteiCsqbbIu6j-Hk3P3ABsPR6VryZv0WAqfOAjEpTBtuNxXP3ziZ4lc5nJxjjJLETQ9eerV-4QBseU5jxIACFREUJWt0g3Qzsnw24D/https%3A%2F%2Fbioconductor.org%2Fpackages%2Frelease%2Fbioc%2Fhtml%2FdrawProteins.html
> which is giving a build error.
>
>         [[alternative HTML version deleted]]
>
> _______________________________________________
> Bioc-devel using r-project.org mailing list
>
> https://secure-web.cisco.com/1jtNofEmaYZgBzviy6yomq6OhQitQ2-XaFsj3w3cbUO9-ooCBrC-66NZ7_qPnF-4rImp8d7AZSynOz4F5saaenkigYkjedWSEQkgbxvgGDxlWfEn3S-TS5lxs2lFxVhUengZUEJ4eIniSLTx3iAqABfKMXfrumIO_WbwKbUr6P5kN9VfD_vtpifigwCckByiEJkwvDV198aQHQo9Y2I3A5fO1TghvfcM_AghogEfIjRdEsHovFRKfZrJS1l3-REhNYNcL-xQdvxmNMFrcVS-MmAZ3VJHqMtgTMzxfuCgwlTfkx-5oXPLqrbFKAh4h1xFM/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>
>
> This email message may contain legally privileged and/or confidential
> information. If you are not the intended recipient(s), or the employee or
> agent responsible for the delivery of this message to the intended
> recipient(s), you are hereby notified that any disclosure, copying,
> distribution, or use of this email message is prohibited. If you have
> received this message in error, please notify the sender immediately by
> e-mail and delete this email message from your computer. Thank you.
>

	[[alternative HTML version deleted]]