[Bioc-devel] problems understanding build error

[Ramos Perez, Marcel]

Hi Michael,

Thanks for reporting. This has been fixed in the latest version of
BiocCheck (1.41.9).

Best regards,
Marcel

On 7/26/24 5:29 AM, Michael Shapiro wrote:
> We are currently working through the submission of a new package, CatsCradle (issue #3452).  We get a build error from the Coding Practices section of the BiocCheck tests, namely
> 
> 
> Error in seq.default(which(cond) - length(notLookback), which(cond)) :
>    'from' must be of length 1
> 
> For whatever reason, we do not get this error when running BiocCheck locally.
> 
> We have consulted
> https://bioconductor.org/packages/devel/bioc/vignettes/BiocCheck/inst/doc/BiocCheck.html#coding-practices-checks
> and the closest we can find is the recommendation to use seq_len(N) in place of things like 1:N.    We are now consistently using seq_len for sequences that begin with 1 and seq(from=a,to=b) for sequences beginning at other values but this has not resolved the error.
> 
> Any assistance with this would be very much appreciated.
> 
> The Francis Crick Institute Limited is a registered charity in England and Wales no. 1140062 and a company registered in England and Wales no. 06885462, with its registered office at 1 Midland Road London NW1 1AT
> 
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> 
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-- 
Marcel Ramos Pérez
Roswell Park Comprehensive Cancer Center
Dept. of Biostatistics and Bioinformatics
Elm & Carlton Streets
Buffalo, New York, 14263



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