[Bioc-devel] issue to open a file from UCSC

[Zuguang Gu]

You can use

https://hgdownload2.soe.ucsc.edu/goldenPath/hg19/database/chromInfo.txt.gz
https://hgdownload.soe.ucsc.edu/goldenPath/hg19/database/chromInfo.txt.gz

instead.

On Thu, 8 Feb 2024 at 20:03, Martin, Tiphaine via Bioc-devel <
bioc-devel using r-project.org> wrote:

> Hi,
>
> I have an error in the package compilation because of issues accessing a
> file from UCSC.
> Are you aware of such type of issue? What do I need to do?
>
> Quitting from lines 337-345 [cometwebPlot] (coMET.Rnw)
> Error: processing vignette 'coMET.Rnw' failed with diagnostics:
> error in evaluating the argument 'object' in selecting a method for
> function 'getTable': cannot open URL '
> https://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/chromInfo.txt.gz'
>
> Thanks,
> Tiphaine
>
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>
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