[Bioc-devel] Fix dependency issues in devel and release

[Kern, Lori]

You should update the package yourself by pushing to the RELEASE_3_20 and devel branches on git.bioconductor.org




Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Aurora Maurizio <auroramaurizio1 using gmail.com>
Sent: Monday, December 30, 2024 4:14 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] Fix dependency issues in devel and release

Dear Bioconductor Team,

A package that SurfR depended on was recently removed from CRAN. I noticed
that the authors have been active on its GitHub repo lately, so I am
hopeful that it will become available again soon.

In the meantime, I have addressed the issue by rewriting the affected
SurfR-related functions and removing that package from SurfR's
dependencies. Currently, I recommend users who encounter installation
issues due to this dependency to install the development version of SurfR
directly from my GitHub repository.

Would it be possible for you to sync  the released version of SurfR on
Bioconductor to reflect these changes? This would ensure that users can
continue to install and use SurfR without encountering dependency issues.

Thank you for your time and assistance. Please let me know if there are any
additional steps I need to take to facilitate this process.

Best wishes,
Aurora

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