[Bioc-devel] Mac arrow installation problem causing R CMD check fail

[Jennifer Wokaty]

Could you tell me what packages? You can follow up with me directly and I can look at the build machines.


Jennifer Wokaty (they/them)

Waldron Lab at CUNY SPH
Bioconductor Core Team
________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Dongyi Lu <dl3764 using columbia.edu>
Sent: Thursday, August 22, 2024 11:12 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] Mac arrow installation problem causing R CMD check fail

* This email originates from a sender outside of CUNY. Verify the sender before replying or clicking on links and attachments. *

Hi,

My packages have been failing R CMD check on the Bioc server on Mac because
of this error:

unable to load shared object
'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/arrow/libs/arrow.so':

dlopen(/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/arrow/libs/arrow.so,
0x0006): symbol not found in flat namespace (_ZSTD_compress)

Apparently it's a problem with the installation of the arrow package. It
doesn't happen on Linux and Windows. What to do?

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