[Bioc-devel] Mac arrow installation problem causing R CMD check fail

Martin Grigorov m@rt|n@gr|gorov @end|ng |rom gm@||@com
Thu Aug 22 17:17:20 CEST 2024


Hi,

On Thu, 22 Aug 2024 at 18:12, Dongyi Lu <dl3764 using columbia.edu> wrote:

> Hi,
>
> My packages have been failing R CMD check on the Bioc server on Mac because
> of this error:
>
> unable to load shared object
>
> '/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/arrow/libs/arrow.so':
>
>
> dlopen(/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/arrow/libs/arrow.so,


Do you know why it looks for .so instead of .dylib ?


> 0x0006): symbol not found in flat namespace (_ZSTD_compress)
>
> Apparently it's a problem with the installation of the arrow package. It
> doesn't happen on Linux and Windows. What to do?
>
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>
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