[Bioc-devel] git commit issues

[Kern, Lori]

Bioconductor does not have a main branch.  Please refer to documentation
http://contributions.bioconductor.org/git-version-control.html


Bioconductor default branch is devel.   If you have set up where your default branch is main do to another remote (like github), You can map main to devel with something like the following

git push upstream main:devel



Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Carlotta Meyring <carlotta.meyring using uniklinik-freiburg.de>
Sent: Tuesday, April 23, 2024 7:04 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] git commit issues

Hello,

I submitted a package named zitools to Bioconductor. Now I want to committ he updatest o Bioconductor.
However, this is not working.

My output of:
$ git remote -v
origin  https://secure-web.cisco.com/1GnPQpRFt9TG8Nx9p4h1Z4s0wSct926b0z1tufMD1WU2mNF0fsogaDXit-OEpae5_TTuayObS0WA6uaEPYzzxlZPnIB32lupQMWF5sIcLl7CYmwdkmLJgZiDCQiJMyfX7r_xVsLaagPMfz30RViw070xq2YaudeE_TWg75Zenet-6p96pTGE-_yF4Ma-aRKX617hS0DXZll2izCm1l4wDG2JcHy5AfQA1DALcetU2mIF5DphPhTJoTLvXYjbyZB3a1x1720-BIxVXG__2vDN1HfVNUrL0krNSJoGhsxtieXA98d124cn_Hvv-7ZJneM5s/https%3A%2F%2Fgithub.com%2Fkreutz-lab%2Fzitools.git (fetch)
origin  https://secure-web.cisco.com/1GnPQpRFt9TG8Nx9p4h1Z4s0wSct926b0z1tufMD1WU2mNF0fsogaDXit-OEpae5_TTuayObS0WA6uaEPYzzxlZPnIB32lupQMWF5sIcLl7CYmwdkmLJgZiDCQiJMyfX7r_xVsLaagPMfz30RViw070xq2YaudeE_TWg75Zenet-6p96pTGE-_yF4Ma-aRKX617hS0DXZll2izCm1l4wDG2JcHy5AfQA1DALcetU2mIF5DphPhTJoTLvXYjbyZB3a1x1720-BIxVXG__2vDN1HfVNUrL0krNSJoGhsxtieXA98d124cn_Hvv-7ZJneM5s/https%3A%2F%2Fgithub.com%2Fkreutz-lab%2Fzitools.git (push)
upstream        git using git.bioconductor.org:zitools/zitools.git (fetch)
upstream        git using git.bioconductor.org:zitools/zitools.git (push)


and if I check ssh -T git using git.bioconductor.org
I have both read (R) and write (W) permissions for the package.
However if I run:
git push upstream main

I get the following error.
error: cannot spawn https://secure-web.cisco.com/1bfCTvE0S1JmnGSX6z44y7yimg-nfasTqmfDDXfXVBOI1bpKy7NuEFFLr5w0u3fbJ9lMuxWaPPHwL5RcAaAycGcJ39-zsU3QRgt0PId5_xwPJuh8eTK3aV9wcQdpuDR9NdK2-TTTjc-n23sir6NbYEVOMjLUYduMsu6_hOEDYkRO_UrLZ4CplEWgV9f4wYBcj7KRBoNjZ5KilpXhEL2LF-ifif9meNJnoAMx--FEbEp9PPb5IkLsRLn79Xgp5D-kthzcYQhQbr0iEuYvBDVqKETPtjHhPLG7_1Dt7KgQJBDd-xFyoZHAfvQdgsr-UP01k/https%3A%2F%2Fgithub.com%2Fmyname.keys%3A No such file or directory
error: cannot spawn https://secure-web.cisco.com/1bfCTvE0S1JmnGSX6z44y7yimg-nfasTqmfDDXfXVBOI1bpKy7NuEFFLr5w0u3fbJ9lMuxWaPPHwL5RcAaAycGcJ39-zsU3QRgt0PId5_xwPJuh8eTK3aV9wcQdpuDR9NdK2-TTTjc-n23sir6NbYEVOMjLUYduMsu6_hOEDYkRO_UrLZ4CplEWgV9f4wYBcj7KRBoNjZ5KilpXhEL2LF-ifif9meNJnoAMx--FEbEp9PPb5IkLsRLn79Xgp5D-kthzcYQhQbr0iEuYvBDVqKETPtjHhPLG7_1Dt7KgQJBDd-xFyoZHAfvQdgsr-UP01k/https%3A%2F%2Fgithub.com%2Fmyname.keys%3A No such file or directory
fatal: unable to fork

Any help is highly appreciated. Thanks in advance,

Carlotta





Carlotta Meyring
Methods of Modelling and Bioinformatics in Systems Biomedicine (MSB)
Institute of Medical Biometry and Statistics (IMBI)
Faculty of Medicine and Medical Center - University of Freiburg

Postal Address: Stefan-Meier-Str. 26, 79104 Freiburg
Mail: carlotta.meyring using uniklinik-freiburg.de
Phone: +49 761 270 83805
Homepage: http://secure-web.cisco.com/12cYQm0BZOpBmyHwRDtdk_I-5jlGrvbxv8i3g0J8wNkoKBLPoKY_vPDGfKJ2H8ciFuXBzxpJgVz91isuH_FXfvmi87-balDCB76K63rbbLd51ogmmL68wigw88VF5jw7T9Re-6vIgniPVDUdhX1djUVwDUXrNZ9E1gu6AJDlnCiOaKbyZ4xzGpmu9mEya-E7O4qb1kKFD0pTtpW7HRb3XvOVWxNj-PzVPHSnujHIajweDSmsIc2u8xXNjw7No6uE33fsCFxAWC1rFnOfZT9C11SipQpszJ-A0-pQYSRPp3Qncq0rRBDl38Hem448R4OjR/http%3A%2F%2Fwww.uniklinik-freiburg.de%2Fimbi%2Fmsb.html<http://secure-web.cisco.com/1R4JrM9-sEUVTPnau9d1hcgSzQNSJQofy-Ui6cNGM_9UjoCt9pkicBP7OQMeTKfwuyej7V6VnMWz09h6Ue48_0mRhwHqNvorWrSV_QAIwIItIY4XqrcFBvyxoCWYB3jcYTTf_CKIwywZmkCtIfRaM5igOyLYEAzSQDD_ylAzDYZVTgwANWyCN-aK_sR6Nz3_z04QH1Kuqc1-8Egya16goOdvD5MuDz5rCo5jaDtLnTLInZli_YWN_4EW-ZcKcZwtLXo8BVaybDjaYbt_QBxydHybVIKCb1umlvOWvVwAVWglflmFUjQfN2jWYKS45EfQD/http%3A%2F%2Fwww.uniklinik-freiburg.de%2Fimbi.html>


        [[alternative HTML version deleted]]

_______________________________________________
Bioc-devel using r-project.org mailing list
https://secure-web.cisco.com/1XLGwqRTfmMO98IgjtS1Yt9VUbQA_EJlg6LSKZY1FLyiqVzPnDHtntruhUJwJc5av2jFbsxH7QXHWg8sbTMj0X8PlZwGgVmYHJ4fK_dByg9RGjoJIMbBfkZ1WELRvFSUQ3z3vXcOEFHANWR2E2DDd9SqnjYVx-XEvbwvpN1hZZ4cxsTxA4tq8TpBgZlPXAimm9fdwmtcE-lEhVVe7XX7rYHzXpXJ1ksthMDqVffo2D0CODF8lgMLpkSCMKv6j_2cSNjYoHhR5SBI_ts4Kiidla6B4jA-uP5Gco-Br6KD5SSLEti-mCBzCr0jSAEgtFIFz/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel



This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
	[[alternative HTML version deleted]]