[Bioc-devel] Omada package failing due to removed dependency

Sokratis Kariotis @okr@t|@k@r|ot|@ @end|ng |rom gm@||@com
Wed Apr 3 04:23:07 CEST 2024 

Hey,

As an update, I managed to push the changes in devel (can see them in
https://code.bioconductor.org/browse/omada/commits/devel) but I am still
waiting for the build (
https://bioconductor.org/checkResults/3.19/bioc-LATEST/omada/) to go green.
After that happens I have to cherry-pick from devel to RELEASE_3_18 correct?

Cheers,
Sokratis

On Tue, Apr 2, 2024 at 11:06 AM Sokratis Kariotis <
sokratiskariotis using gmail.com> wrote:

> Dear all,
>
> I am getting some warnings that the Omada package is failing. If I am
> correct I need to make some changes to both the devel and Release_3_18
> branches. Because I am using a new laptop, could you let me know how to
> make the necessary changes to fix both branches ( I mean how to connect and
> upload my new code)? Thanks in advance!
>
> Regards,
> Dr. Sokratis Kariotis
>
> On Fri, Feb 9, 2024 at 10:27 AM Sokratis Kariotis <
> sokratiskariotis using gmail.com> wrote:
>
>> Hey,
>>
>> Hope I find you well! I have pushed some changes in devel and (I believe)
>> in branch RELEASE_3_18. Could you check if it was done correctly and
>> whether it can reflect in the current available version? The updates were
>> minor but required for journal publication. Thanks!
>>
>> Regards,
>> Dr. Sokratis Kariotis
>>
>> On Wed, Sep 13, 2023 at 12:42 AM Lori Shepherd <shepherd.bioc using gmail.com>
>> wrote:
>>
>>> It would be great if you were able to also update the current release
>>> RELEASE_3_17 branch so that the current users can use the package and so
>>> that a broken version of the package is not saved for the Bioc 3.17 version
>>> of packages.  But the package will be ok for the new release as long as it
>>> is fixed in devel and will progate the fixed package at the end of October
>>> to the new release.
>>>
>>>
>>>
>>> Lori Shepherd - Kern
>>>
>>> Bioconductor Core Team
>>>
>>> Roswell Park Comprehensive Cancer Center
>>>
>>>
>>> On Mon, Sep 11, 2023 at 10:05 PM Sokratis Kariotis <
>>> sokratiskariotis using gmail.com> wrote:
>>>
>>>> Hey,
>>>>
>>>> Will the package be ok for the new release even though I still get the
>>>> same
>>>> error?
>>>>
>>>> Cheers,
>>>> Sokratis
>>>>
>>>> On Thu, Aug 17, 2023 at 3:38 PM Mike Smith <grimbough using gmail.com> wrote:
>>>>
>>>> > Hi Sokratis,
>>>> >
>>>> > You've address the problems successfully in the devel branch (3.18)
>>>> but
>>>> > they remain in the release (3.17), so you're probably still getting
>>>> the
>>>> > messages relating to these builds (
>>>> > https://bioconductor.org/checkResults/3.17/bioc-LATEST/omada/).
>>>> >
>>>> > To fix this you'll need to checkout the RELEASE_3_17 branch, and then
>>>> make
>>>> > the same changes you've already applied.  You can either do that via
>>>> git
>>>> > cherry-pick and select the appropriate commits from devel branch, or
>>>> > perhaps more straightforward is to just copy/paste the relevant
>>>> sections.
>>>> > Then bump the RELEASE_3_17 version number to 1.2.1 and push that
>>>> branch.
>>>> > Hopefully this will fix the issues there too.
>>>> >
>>>> > Best,
>>>> > Mike
>>>> >
>>>> > On Thu, 17 Aug 2023 at 03:47, Sokratis Kariotis <
>>>> > sokratiskariotis using gmail.com> wrote:
>>>> >
>>>> >> Hey all,
>>>> >>
>>>> >> I can see all is green but I still get messages about failing builds
>>>> and
>>>> >> on
>>>> >> the website shows build error. Do I still have to do something?
>>>> Thanks in
>>>> >> advance.
>>>> >>
>>>> >> Regards,
>>>> >> Sokratis
>>>> >>
>>>> >> On Thu, Aug 10, 2023 at 2:53 PM Martin Grigorov <
>>>> >> martin.grigorov using gmail.com>
>>>> >> wrote:
>>>> >>
>>>> >> > Hi,
>>>> >> >
>>>> >> > All is green at
>>>> >> > https://bioconductor.org/checkResults/3.18/bioc-LATEST/omada/
>>>> >> >
>>>> >> > Regards,
>>>> >> > Martin
>>>> >> >
>>>> >> > On Thu, Aug 10, 2023 at 9:44 AM Sokratis Kariotis <
>>>> >> > sokratiskariotis using gmail.com> wrote:
>>>> >> >
>>>> >> >> Hey all,
>>>> >> >>
>>>> >> >> Is this fixed now? I think I can see all pass, but on the actual
>>>> >> website
>>>> >> >> its still on error. Thanks!
>>>> >> >>
>>>> >> >> Cheers,
>>>> >> >> Sokratis
>>>> >> >>
>>>> >> >> On Tue, Aug 1, 2023 at 4:25 PM Sokratis Kariotis <
>>>> >> >> sokratiskariotis using gmail.com> wrote:
>>>> >> >>
>>>> >> >>> Hey,
>>>> >> >>>
>>>> >> >>> I believe I have resolved the conflicts and now can run: *git
>>>> push
>>>> >> >>> upstream main:devel*
>>>> >> >>> with Everything up-to-date as a result. However, *git push origin
>>>> >> main*
>>>> >> >>> does not yield
>>>> >> >>> anything and it keeps hanging without a message. I checked
>>>> >> https://bioconductor.org/checkResults/3.18/bioc-LATEST/omada/
>>>> >> >>> and the last commit is April.
>>>> >> >>>
>>>> >> >>>
>>>> >> >>> On Mon, Jul 31, 2023 at 10:01 PM Kern, Lori <
>>>> >> >>> Lori.Shepherd using roswellpark.org> wrote:
>>>> >> >>>
>>>> >> >>>> You'll need to find the merge conflicts and resolve them.
>>>> Recommit
>>>> >> >>>> those files and then it should go.
>>>> >> >>>>
>>>> >> >>>> Lori Shepherd - Kern
>>>> >> >>>>
>>>> >> >>>> Bioconductor Core Team
>>>> >> >>>>
>>>> >> >>>> Roswell Park Comprehensive Cancer Center
>>>> >> >>>>
>>>> >> >>>> Department of Biostatistics & Bioinformatics
>>>> >> >>>>
>>>> >> >>>> Elm & Carlton Streets
>>>> >> >>>>
>>>> >> >>>> Buffalo, New York 14263
>>>> >> >>>> ------------------------------
>>>> >> >>>> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on
>>>> behalf of
>>>> >> >>>> Sokratis Kariotis <sokratiskariotis using gmail.com>
>>>> >> >>>> *Sent:* Monday, July 31, 2023 7:27 AM
>>>> >> >>>> *To:* Martin Grigorov <martin.grigorov using gmail.com>
>>>> >> >>>> *Cc:* bioc-devel using r-project.org <bioc-devel using r-project.org>
>>>> >> >>>> *Subject:* Re: [Bioc-devel] Omada package failing due to removed
>>>> >> >>>> dependency
>>>> >> >>>>
>>>> >> >>>> Tried but its Already up to date.
>>>> >> >>>>
>>>> >> >>>> On Mon, 31 Jul 2023, 7:22 pm Martin Grigorov, <
>>>> >> >>>> martin.grigorov using gmail.com>
>>>> >> >>>> wrote:
>>>> >> >>>>
>>>> >> >>>> > Hi Sokratis,
>>>> >> >>>> >
>>>> >> >>>> > You need to do "git pull --rebase" before trying to push.
>>>> >> >>>> > Most probably the version has been bumped upstream.
>>>> >> >>>> >
>>>> >> >>>> > Regards,
>>>> >> >>>> > Martin
>>>> >> >>>> >
>>>> >> >>>> > On Mon, Jul 31, 2023 at 2:16 PM Sokratis Kariotis <
>>>> >> >>>> > sokratiskariotis using gmail.com> wrote:
>>>> >> >>>> >
>>>> >> >>>> >> Hey all,
>>>> >> >>>> >>
>>>> >> >>>> >> I created a new key and now I can commit etc but there is a
>>>> >> conflict
>>>> >> >>>> that
>>>> >> >>>> >> is not allowing me to go ahead.
>>>> >> >>>> >>
>>>> >> >>>> >> My commands:
>>>> >> >>>> >> git add .
>>>> >> >>>> >> git commit -m "Update metrics"
>>>> >> >>>> >> git push upstream main:devel
>>>> >> >>>> >>
>>>> >> >>>> >> *The above results in the following error:*
>>>> >> >>>> >>
>>>> >> >>>> >>
>>>> >> >>>> >>
>>>> >> >>>> >>
>>>> >> >>>> >>
>>>> >> >>>> >>
>>>> >> >>>> >>
>>>> >> >>>> >>
>>>> >> >>>> >>
>>>> >> >>>> >>
>>>> >> >>>> >>
>>>> >> >>>> >>
>>>> >> >>>> >>
>>>> >> >>>> >> *Enumerating objects: 19, done.Counting objects: 100%
>>>> (17/17),
>>>> >> >>>> done.Delta
>>>> >> >>>> >> compression using up to 16 threadsCompressing objects: 100%
>>>> >> (11/11),
>>>> >> >>>> >> done.Writing objects: 100% (11/11), 4.78 KiB | 4.78 MiB/s,
>>>> >> >>>> done.Total 11
>>>> >> >>>> >> (delta 7), reused 0 (delta 0), pack-reused 0remote: Error:
>>>> You
>>>> >> >>>> cannot push
>>>> >> >>>> >> without resolving merge conflicts.remote:remote: Please
>>>> check the
>>>> >> >>>> files in
>>>> >> >>>> >> the commit pushed to the git-serverremote: for merge conflict
>>>> >> >>>> markers like
>>>> >> >>>> >> '<<<<<<<', '========', '>>>>>>>'.remote:To
>>>> >> >>>> >> git.bioconductor.org:packages/omada ! [remote rejected]
>>>> main ->
>>>> >> >>>> devel
>>>> >> >>>> >> (pre-receive hook declined)error: failed to push some refs to
>>>> >> >>>> >> 'git.bioconductor.org:packages/omada'*
>>>> >> >>>> >>
>>>> >> >>>> >>
>>>> >> >>>> >>
>>>> >> >>>> >> On Mon, Jul 31, 2023 at 3:36 PM Mike Smith <
>>>> grimbough using gmail.com>
>>>> >> >>>> wrote:
>>>> >> >>>> >>
>>>> >> >>>> >> > Hi Sokratis,
>>>> >> >>>> >> >
>>>> >> >>>> >> > Everything in Bioconductor is built around the central
>>>> >> >>>> Bioconductor git
>>>> >> >>>> >> > repositories.  The only way to get changes out to users is
>>>> to
>>>> >> >>>> commit
>>>> >> >>>> >> them
>>>> >> >>>> >> > to git.bioconductor.org and then the build system will
>>>> pick
>>>> >> those
>>>> >> >>>> up,
>>>> >> >>>> >> run
>>>> >> >>>> >> > the tests and checks, create new versions of packages, and
>>>> make
>>>> >> >>>> them
>>>> >> >>>> >> > available for distribution.
>>>> >> >>>> >> >
>>>> >> >>>> >> > Perhaps you can include the git command you're running to
>>>> submit
>>>> >> >>>> the
>>>> >> >>>> >> > changes and a copy of the exact error you're receiving.
>>>> That
>>>> >> >>>> might help
>>>> >> >>>> >> > the team suggest a solution.
>>>> >> >>>> >> >
>>>> >> >>>> >> > Best regards,
>>>> >> >>>> >> > Mike
>>>> >> >>>> >> >
>>>> >> >>>> >> > On Fri, 28 Jul 2023 at 08:32, Sokratis Kariotis <
>>>> >> >>>> >> > sokratiskariotis using gmail.com> wrote:
>>>> >> >>>> >> >
>>>> >> >>>> >> >> Hey both,
>>>> >> >>>> >> >>
>>>> >> >>>> >> >> I have edited the package code but I'm having some
>>>> difficulties
>>>> >> >>>> >> pushing it
>>>> >> >>>> >> >> to trigger another build (github passphrase). Is there
>>>> another
>>>> >> >>>> way to
>>>> >> >>>> >> >> trigger the build? Thanks!
>>>> >> >>>> >> >>
>>>> >> >>>> >> >> Cheers,
>>>> >> >>>> >> >> Sokratis
>>>> >> >>>> >> >>
>>>> >> >>>> >> >> On Wed, Jul 12, 2023 at 1:43 AM Kern, Lori <
>>>> >> >>>> >> Lori.Shepherd using roswellpark.org
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> wrote:
>>>> >> >>>> >> >>
>>>> >> >>>> >> >> > We can give you a little more time (a few weeks) to fix
>>>> the
>>>> >> >>>> package
>>>> >> >>>> >> but
>>>> >> >>>> >> >> > please fix as soon as possible to avoid deprecation.
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Cheers,
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Lori Shepherd - Kern
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Bioconductor Core Team
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Roswell Park Comprehensive Cancer Center
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Department of Biostatistics & Bioinformatics
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Elm & Carlton Streets
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Buffalo, New York 14263
>>>> >> >>>> >> >> > ------------------------------
>>>> >> >>>> >> >> > *From:* Sokratis Kariotis <sokratiskariotis using gmail.com>
>>>> >> >>>> >> >> > *Sent:* Monday, July 10, 2023 10:27 AM
>>>> >> >>>> >> >> > *To:* Kern, Lori <Lori.Shepherd using RoswellPark.org>
>>>> >> >>>> >> >> > *Cc:* Oleksii Nikolaienko <
>>>> oleksii.nikolaienko using gmail.com>;
>>>> >> >>>> >> >> > bioc-devel using r-project.org <bioc-devel using r-project.org>
>>>> >> >>>> >> >> > *Subject:* Re: [Bioc-devel] Omada package failing due to
>>>> >> removed
>>>> >> >>>> >> >> > dependency
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Hey both,
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > I have checked the package license (GPL) and it should
>>>> be
>>>> >> fine
>>>> >> >>>> to use
>>>> >> >>>> >> >> the
>>>> >> >>>> >> >> > code. However, I am having difficulty finding the actual
>>>> >> code to
>>>> >> >>>> >> >> calculate
>>>> >> >>>> >> >> > the internal metrics I am using (used in Omada's
>>>> function
>>>> >> >>>> >> >> > cluster_voting.R). I can only find the wrapper function
>>>> but
>>>> >> not
>>>> >> >>>> the
>>>> >> >>>> >> ones
>>>> >> >>>> >> >> > that actually calculate the metrics. I am not sure how
>>>> to
>>>> >> >>>> proceed
>>>> >> >>>> >> with
>>>> >> >>>> >> >> this
>>>> >> >>>> >> >> > in time, so the Omada package won't get deprecated.
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Regards,
>>>> >> >>>> >> >> > Sokratis
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > On Fri, Jul 7, 2023 at 1:03 AM Kern, Lori <
>>>> >> >>>> >> >> Lori.Shepherd using roswellpark.org>
>>>> >> >>>> >> >> > wrote:
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > We would not hunt down the lab especially for CRAN
>>>> packages,
>>>> >> >>>> but you
>>>> >> >>>> >> >> > could reach out if you like.  That would probably be a
>>>> >> >>>> recommended
>>>> >> >>>> >> >> action
>>>> >> >>>> >> >> > to either ask someone from their lab to maintain or if
>>>> you
>>>> >> are
>>>> >> >>>> >> willing
>>>> >> >>>> >> >> and
>>>> >> >>>> >> >> > you really want the package around you could ask the
>>>> lab if
>>>> >> >>>> they mind
>>>> >> >>>> >> >> you
>>>> >> >>>> >> >> > volunteering to be the new maintainer.
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > There could see two options for rewriting/maintaining.
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > 1. Take over maintenance of the package and resubmit to
>>>> CRAN
>>>> >> >>>> >> >> > It's a little tricky cause this is a CRAN package so
>>>> I'm not
>>>> >> >>>> sure on
>>>> >> >>>> >> >> their
>>>> >> >>>> >> >> > exact policy of taking over an abandoned package. If
>>>> this is
>>>> >> >>>> >> desired,  I
>>>> >> >>>> >> >> > would reach out to CRAN to find out their exact policy
>>>> >> >>>> >> >> > 2. Move needed code to your Bioconductor package
>>>> >> >>>> >> >> > You'll have to check the original package license to
>>>> make
>>>> >> sure
>>>> >> >>>> this
>>>> >> >>>> >> is
>>>> >> >>>> >> >> > allowed under the license of the package. You will
>>>> still want
>>>> >> >>>> to give
>>>> >> >>>> >> >> the
>>>> >> >>>> >> >> > original authors/maintainer credit. I would say to be
>>>> safe I
>>>> >> >>>> would
>>>> >> >>>> >> >> include
>>>> >> >>>> >> >> > them as contributors/authors in the DESCRITPION
>>>> Authors using R
>>>> >> >>>> field and
>>>> >> >>>> >> in
>>>> >> >>>> >> >> > the R code I would add a comment above the code to
>>>> reference
>>>> >> >>>> original
>>>> >> >>>> >> >> > package citation and stating it was copied from there.
>>>> I'm
>>>> >> not
>>>> >> >>>> a
>>>> >> >>>> >> >> lawyer or
>>>> >> >>>> >> >> > license/copy right expert so not sure if that would be
>>>> good
>>>> >> >>>> enough
>>>> >> >>>> >> but
>>>> >> >>>> >> >> that
>>>> >> >>>> >> >> > would be my take on it.
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Lori Shepherd - Kern
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Bioconductor Core Team
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Roswell Park Comprehensive Cancer Center
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Department of Biostatistics & Bioinformatics
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Elm & Carlton Streets
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Buffalo, New York 14263
>>>> >> >>>> >> >> > ------------------------------
>>>> >> >>>> >> >> > *From:* Oleksii Nikolaienko <
>>>> oleksii.nikolaienko using gmail.com>
>>>> >> >>>> >> >> > *Sent:* Thursday, July 6, 2023 1:58 AM
>>>> >> >>>> >> >> > *To:* Sokratis Kariotis <sokratiskariotis using gmail.com>
>>>> >> >>>> >> >> > *Cc:* Kern, Lori <Lori.Shepherd using RoswellPark.org>;
>>>> >> >>>> >> >> bioc-devel using r-project.org
>>>> >> >>>> >> >> > <bioc-devel using r-project.org>
>>>> >> >>>> >> >> > *Subject:* Re: [Bioc-devel] Omada package failing due to
>>>> >> removed
>>>> >> >>>> >> >> > dependency
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> >
>>>> >> >>>>
>>>> >>
>>>> https://secure-web.cisco.com/1EhksuB6k_yI--kj3_CN8LCovo7wAy9Epj-_8W4VV7FAbktome6nKnRrktDrrzsGXq6OrPZzxo7-CPAnrnZ4mFbi1Z-z81fIELFunE2pI8wuUlGU72f4Irnh1TjSXymZHtkM8_5OEv8EPAA1U7i6tUetGY5G8ZODgjnDQZaarKkEspvU92RNlxjLqzIKy-vIrX-TN-TtC-dDyaqOyIVUNZKJws7sU-V4VFjfkwoM5rK9BAdI4jIqcxygwdSeB5XsZftYZVy7nlTD1Rrp46lnGBMqvfBpVOQjd93wM9KQU1nafzbzIag4rrGGGlr_D4ZWB/https%3A%2F%2Fnonstationarity.sciencesconf.org%2Fresource%2Fpage%2Fid%2F7
>>>> >> >>>> >> >> > <
>>>> >> >>>> >> >>
>>>> >> >>>> >>
>>>> >> >>>>
>>>> >>
>>>> https://secure-web.cisco.com/1pCvxIL3lfzw2yMAoq1pXQ5JiavYeyZHI2qtDauHw4xwZZBxaV-dAKGWcVKgwz09vF4YJJGVvkcQloDj0mJOUxj7BI3WPu_1Ze3vDW0a9syxuRsiQNOGsRkJ8BaWBdlxOdRBAw39KujDDGqb_DPfL6IsjHK5UCqoCpzw39GduVcBLFIutoPM8Nqjgp8ArDuh-oK-Bxe-huDYCoLXUX5GyU_fEG81AEtF-osCFtJNLRiQBggrsxcViF8mNihzVj8-UT4cNawHmz7xye_KNs45WZOxnVljiq5QQHuIGCeXRkbYBUvrpcEoTootlVxLloYK0/https%3A%2F%2Fnonstationarity.sciencesconf.org%2Fresource%2Fpage%2Fid%2F7
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > That is, perhaps, not surprising...
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Package seems to be too good to be abandoned. I wonder
>>>> if
>>>> >> >>>> anyone from
>>>> >> >>>> >> >> > their lab
>>>> >> >>>> >> >> > <
>>>> >> >>>> >> >>
>>>> >> >>>> >>
>>>> >> >>>>
>>>> >>
>>>> https://secure-web.cisco.com/1IisY82Mh0-7_0tTgq7v7MgjvGFKIBucg15oqE_SNpUPzwuvYYaCPgz427Efo9Xga7j3PYM6msIsM8GJAK7ofsjmhrfAG3_kBGCmTdF0gVYBUz17CdZjNygLUpDMXPSt6h5CfKAjX_SrymhwTWvvEuyH1cH3nCYhVkVd5xfdd2W5azA0g9MJ4bPASnxJwY9quFxu_6CAIuYXkkO_DqiO9NC6Nb22USMev1V4qh5A3IX2kg6l60sRbM9gDQWjNwbJAPSnWq9G5setIw9CNP8avnjON5nhm_cjNhhn6s6kY07wwiSQ4sSQqsekskzOjhbm1/https%3A%2F%2Fmodalx.parisnanterre.fr%2Fmembres
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > could take over maintenance, if you still bother to
>>>> ask...
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Best,
>>>> >> >>>> >> >> > Oleksii
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > On Thu, 6 Jul 2023 at 06:23, Sokratis Kariotis <
>>>> >> >>>> >> >> sokratiskariotis using gmail.com>
>>>> >> >>>> >> >> > wrote:
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Hey,
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > I haven't received any responses from the maintainer of
>>>> >> >>>> ClusterCrit
>>>> >> >>>> >> so I
>>>> >> >>>> >> >> > guess I will have to re-write the code used. How can I
>>>> >> properly
>>>> >> >>>> go
>>>> >> >>>> >> about
>>>> >> >>>> >> >> > this and credit the authors as well? Thanks!
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Cheers,
>>>> >> >>>> >> >> > Sokratis
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > On Thu, Jun 29, 2023 at 7:38 PM Kern, Lori <
>>>> >> >>>> >> >> Lori.Shepherd using roswellpark.org>
>>>> >> >>>> >> >> > wrote:
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > We do not allow archived packages to be used.  All
>>>> >> dependencies
>>>> >> >>>> must
>>>> >> >>>> >> be
>>>> >> >>>> >> >> on
>>>> >> >>>> >> >> > CRAN or Bioconductor. So yes if you can get them to
>>>> reinstate
>>>> >> >>>> the
>>>> >> >>>> >> >> package
>>>> >> >>>> >> >> > on CRAN that would be ideal.  If not you will have to
>>>> remove
>>>> >> the
>>>> >> >>>> >> package
>>>> >> >>>> >> >> > from the dependency list and either re-write the code
>>>> used
>>>> >> >>>> (giving
>>>> >> >>>> >> >> original
>>>> >> >>>> >> >> > clusterCrit authors credit) or remove the functionality
>>>> used
>>>> >> >>>> from
>>>> >> >>>> >> that
>>>> >> >>>> >> >> > package.
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Lori Shepherd - Kern
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Bioconductor Core Team
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Roswell Park Comprehensive Cancer Center
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Department of Biostatistics & Bioinformatics
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Elm & Carlton Streets
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Buffalo, New York 14263
>>>> >> >>>> >> >> > ------------------------------
>>>> >> >>>> >> >> > *From:* Bioc-devel <bioc-devel-bounces using r-project.org>
>>>> on
>>>> >> >>>> behalf of
>>>> >> >>>> >> >> > Oleksii Nikolaienko <oleksii.nikolaienko using gmail.com>
>>>> >> >>>> >> >> > *Sent:* Thursday, June 29, 2023 5:36 AM
>>>> >> >>>> >> >> > *To:* Sokratis Kariotis <sokratiskariotis using gmail.com>
>>>> >> >>>> >> >> > *Cc:* bioc-devel using r-project.org <
>>>> bioc-devel using r-project.org>
>>>> >> >>>> >> >> > *Subject:* Re: [Bioc-devel] Omada package failing due to
>>>> >> removed
>>>> >> >>>> >> >> > dependency
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Hi,
>>>> >> >>>> >> >> > in this case maybe it's worth reaching out to the
>>>> maintainer
>>>> >> of
>>>> >> >>>> >> >> > clusterCrit. It was removed from CRAN because of
>>>> >> (seems-to-be)
>>>> >> >>>> minor
>>>> >> >>>> >> >> > warnings, which can be addressed by the clusterCrit
>>>> developer
>>>> >> >>>> in no
>>>> >> >>>> >> >> time...
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > Best,
>>>> >> >>>> >> >> > Oleksii
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > On Thu, 29 Jun 2023 at 08:44, Sokratis Kariotis <
>>>> >> >>>> >> >> > sokratiskariotis using gmail.com>
>>>> >> >>>> >> >> > wrote:
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > > Dear Bioconductor team,
>>>> >> >>>> >> >> > >
>>>> >> >>>> >> >> > > I received an email that my package "Omada" is
>>>> failing in
>>>> >> >>>> release
>>>> >> >>>> >> and
>>>> >> >>>> >> >> > > devel. I had a look and the problem seems to be:
>>>> *ERROR:
>>>> >> >>>> dependency
>>>> >> >>>> >> >> > > ‘clusterCrit’ is not available for package ‘omada’*.
>>>> So the
>>>> >> >>>> package
>>>> >> >>>> >> >> > > clusterCrit was removed. Is there a way I can use a
>>>> >> archived
>>>> >> >>>> >> version
>>>> >> >>>> >> >> of
>>>> >> >>>> >> >> > it
>>>> >> >>>> >> >> > > (or something similar) so I don't have to rewrite code
>>>> >> based
>>>> >> >>>> on new
>>>> >> >>>> >> >> > > packages to avoid potentially inconsistencies? Please
>>>> >> advise,
>>>> >> >>>> thank
>>>> >> >>>> >> >> you!
>>>> >> >>>> >> >> > >
>>>> >> >>>> >> >> > > Cheers,
>>>> >> >>>> >> >> > > Dr. Sokratis Kariotis (PhD)
>>>> >> >>>> >> >> > > Agency for Science, Technology and Research (A*STAR)
>>>> >> >>>> >> >> > > Singapore Immunology Network (SIgN)
>>>> >> >>>> >> >> > > Twitter: @s_kariotis <
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >>
>>>> >> >>>> >>
>>>> >> >>>>
>>>> >>
>>>> https://secure-web.cisco.com/1EqWv8V2N5hRbw3HmoPEY8RdpEeWxqDoUa71DV8jQUiygXZiRjRxTOSFFWWDUSN7nw3Aviue7E_1xQuvbY4J8O3un4nvR0wtrlQUjMbs1vFGt5o9bI_InwlMvRWb2dhIe9ic0_2ugbdCwXwW_RGN1G4LJxUxm_yO9EkGSnc10bfG2fjit4oALm7Y8gMqnFusMJfqR3j-IKbu0Hem-jPRYXIeAurGmn1l7FvPYk9Pi6MHnOl1RN-5x19R655qOhP8vtsh9q-qwvckAbwuklQvq6lo0zKstGTdB6JkFCIIHswJrur4WrdjGMtwrYkWwOAQs/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>>> >> >>>> >> >> > >
>>>> >> >>>> >> >> > > LinkedIn:
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >>
>>>> >> >>>> >>
>>>> >> >>>>
>>>> >>
>>>> http://secure-web.cisco.com/1hrH0VDgCpCKm6BWl_eP9v57iZE2j6Y9RUetJ4RMrKylsFeYV7AWyeBfOewj6SpLxhrD-_JnI4sPdaUJB9Mwxuj-B5ot2FZIu4AU87ty04CdxW8zw9DShqtsaZPm68os9ySeI12kEcN_iujEcY11StQo1_qKeBsQchHO3Vc_qvfAbA2T29jSt4KX0OnG4UZENEfns3cigBqNgiYMOOiCGmz01_nIY5M3cgVbsTmSNA-pov7ZD6si4bOXF6pt-manBCeK0NB13icO5MMlpc8HNxSqkARD7n-R71Sa3ZsGQOIYPgA0uuuIRAR9DbV_F5kSj/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>>> >> >>>> >> >> > >
>>>> >> >>>> >> >> > >         [[alternative HTML version deleted]]
>>>> >> >>>> >> >> > >
>>>> >> >>>> >> >> > > _______________________________________________
>>>> >> >>>> >> >> > > Bioc-devel using r-project.org mailing list
>>>> >> >>>> >> >> > >
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >>
>>>> >> >>>> >>
>>>> >> >>>>
>>>> >>
>>>> https://secure-web.cisco.com/1CoMZlPPSNe-MfqZkOpNFvpMkwbnIVkEbPIxbET9FKoHMGCVzTeeTdPJGpD4PHivCSzZwalSMt8BeA1_Ab8Pa5gS2jCkg9_onfbYE3UAgbywg5GD1CrAN86qgN8FH4tjTwPBq95yDFIvYCamr14TUrSDkZKUvFhtAw7FR6bpJ_Ub9z2fU6f-G3Xw_FHRqcg6aM9xrpq4GmnfMOKO_Jlf10TJsdvhdReM9Phw2lV_EMy55ZjFYD5bteCpN4_qqRQb4_J6IbFYjlRQEi1A0DiwxC67Gzaf0QPTRszxXRxqPy4oancisQKzNmQJod-2cz9Oa/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>>> >> >>>> >> >> > >
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> >         [[alternative HTML version deleted]]
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > _______________________________________________
>>>> >> >>>> >> >> > Bioc-devel using r-project.org mailing list
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >>
>>>> >> >>>> >>
>>>> >> >>>>
>>>> >>
>>>> https://secure-web.cisco.com/1CoMZlPPSNe-MfqZkOpNFvpMkwbnIVkEbPIxbET9FKoHMGCVzTeeTdPJGpD4PHivCSzZwalSMt8BeA1_Ab8Pa5gS2jCkg9_onfbYE3UAgbywg5GD1CrAN86qgN8FH4tjTwPBq95yDFIvYCamr14TUrSDkZKUvFhtAw7FR6bpJ_Ub9z2fU6f-G3Xw_FHRqcg6aM9xrpq4GmnfMOKO_Jlf10TJsdvhdReM9Phw2lV_EMy55ZjFYD5bteCpN4_qqRQb4_J6IbFYjlRQEi1A0DiwxC67Gzaf0QPTRszxXRxqPy4oancisQKzNmQJod-2cz9Oa/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > This email message may contain legally privileged and/or
>>>> >> >>>> confidential
>>>> >> >>>> >> >> > information. If you are not the intended recipient(s),
>>>> or the
>>>> >> >>>> >> employee
>>>> >> >>>> >> >> or
>>>> >> >>>> >> >> > agent responsible for the delivery of this message to
>>>> the
>>>> >> >>>> intended
>>>> >> >>>> >> >> > recipient(s), you are hereby notified that any
>>>> disclosure,
>>>> >> >>>> copying,
>>>> >> >>>> >> >> > distribution, or use of this email message is
>>>> prohibited. If
>>>> >> >>>> you have
>>>> >> >>>> >> >> > received this message in error, please notify the sender
>>>> >> >>>> immediately
>>>> >> >>>> >> by
>>>> >> >>>> >> >> > e-mail and delete this email message from your computer.
>>>> >> Thank
>>>> >> >>>> you.
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > --
>>>> >> >>>> >> >> > Cheers,
>>>> >> >>>> >> >> > Sokratis Kariotis
>>>> >> >>>> >> >> > PhD Student
>>>> >> >>>> >> >> > University of Sheffield, Medical School
>>>> >> >>>> >> >> > MedTech
>>>> >> >>>> >> >> > <
>>>> >> >>>> >> >>
>>>> >> >>>> >>
>>>> >> >>>>
>>>> >>
>>>> https://secure-web.cisco.com/1j_t_6XlNHmK_Mlrd4WRabc9QOpzT2OGES5vH7ZXf-zkhvpeT6fGj6r1c6HMwcYrnxIzGZ6HwikAhhXIh8OkaEgWqigSPXAd_m0NPSjZf7cr7xi4b003k8sYSFAOfwcStP8WCMJQEHURgiHkNDvUmrUdfJYydQO9lMNOyfaP6SnxI2mQX21fOBWIj5wlIAVh9_pBFujbt_XfCBhHL495EtB_s0ntbiowBalE7bhEa4FullCdFTSex4VfICmSriWx91cSPmk1TzmAHv6KZtr7XqAgLH4OzGlGEUTMdjmcrYOoLTC5XpKAljIZMsCwu8hDP/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > President
>>>> >> >>>> >> >> > Twitter: @s_kariotis
>>>> >> >>>> >> >> > <
>>>> >> >>>> >> >>
>>>> >> >>>> >>
>>>> >> >>>>
>>>> >>
>>>> https://secure-web.cisco.com/13IN8xWDrADy-iyp1mknOrX5y2tJixhXPBcywL3EoIE7tOUCkSYs7hbAy2slZfzwMH3Bq9AnScXs3HK_KnDOO2kihBQdfM9nIHxnoa1vAkVFfYH8L_ns7w9KGqC0pzUOOxThE_ZMGVWk1LyQyf-RPrv_HY7RqQZo1IEYNirDTKWBu2lkLCH8qvs8lRMm79wx5eRwdZVYNH0uq7g7EcP_vvK9d8vQ534dzt0hOgHaDByQVi2reoXzwifR0pOYP-6LhdI15nbDtZHxMBmTvueysM77gfHBn7_IUHK6y9-biSIidTmH3GlJMkhk83x7UR5Jk/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > LinkedIn:
>>>> >> >>>>
>>>> >>
>>>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>>> >> >>>> >> >> > <
>>>> >> >>>> >> >>
>>>> >> >>>> >>
>>>> >> >>>>
>>>> >>
>>>> http://secure-web.cisco.com/1h1oCsLmDI6MQdDDyPKrhabJrDBtBogVZA8wMdTLiZENtCtnsB9UQqak12XHMegX9sP0mimjSxawrR5u0VlKLv-D4lrX8u8A05PST1zfXM9VJX6E41Hj2-TOTZm9uOWc8hfxBrCT6UPjQ0X5pFh0sQRgC5tqu2Ks1EALVXZvSixGddS_zQ2C0bQhnc9KLJe8J3jtxPOkUz7QqCjcwpfgixL9ls_ysxmn2OGFxfiMwTmWgUXWcfWwvOXy6OhfeAl_IDK9USdONEsQETuVSgt7f2eVi5DJJBy_4eVwIVz3GV6iTGr2VjRBlh98HxZMAr-iP/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > This email message may contain legally privileged and/or
>>>> >> >>>> confidential
>>>> >> >>>> >> >> > information. If you are not the intended recipient(s),
>>>> or the
>>>> >> >>>> >> employee
>>>> >> >>>> >> >> or
>>>> >> >>>> >> >> > agent responsible for the delivery of this message to
>>>> the
>>>> >> >>>> intended
>>>> >> >>>> >> >> > recipient(s), you are hereby notified that any
>>>> disclosure,
>>>> >> >>>> copying,
>>>> >> >>>> >> >> > distribution, or use of this email message is
>>>> prohibited. If
>>>> >> >>>> you have
>>>> >> >>>> >> >> > received this message in error, please notify the sender
>>>> >> >>>> immediately
>>>> >> >>>> >> by
>>>> >> >>>> >> >> > e-mail and delete this email message from your computer.
>>>> >> Thank
>>>> >> >>>> you.
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > --
>>>> >> >>>> >> >> > Cheers,
>>>> >> >>>> >> >> > Sokratis Kariotis
>>>> >> >>>> >> >> > PhD Student
>>>> >> >>>> >> >> > University of Sheffield, Medical School
>>>> >> >>>> >> >> > MedTech
>>>> >> >>>> >> >> > <
>>>> >> >>>> >> >>
>>>> >> >>>> >>
>>>> >> >>>>
>>>> >>
>>>> https://secure-web.cisco.com/1EbU56JtxgdwdoJoUZSkRfzViaYzT5UpVv7Wn4bHXpw7_iNUn_et52ACzsUWbzs2Du309DRo4wtQgGcVuDWVIPx5vtUsOovTfb6A-HIBq3NSje0v9lBELQCeYZvBzjm0t2kAdce_aXnf8m3mH7-cYUd0C6Wu2R7erAmQwuoI22clJuDcztgq-JhMyIczKcN_UhCUNAzJ-b_kHKI3mxzoO76dg0N8g2MIp_pHBC3x0rVQno00wElfOCtr3poLLQZwpcZCTPoAQmYs-Dfin4Lwoy2-B9Qn5txtHoCygaeneDxgiTHVOAuILij26i2Q9cgAQ/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > President
>>>> >> >>>> >> >> > Twitter: @s_kariotis
>>>> >> >>>> >> >> > <
>>>> >> >>>> >> >>
>>>> >> >>>> >>
>>>> >> >>>>
>>>> >>
>>>> https://secure-web.cisco.com/1RhhMUBj_mRXVHCOKQB6We-WITw332tSjBMu7_BVsJxiUs4tE1EO3zyDwMwygB4WIh8AaEo6gPZZcTCl81Qy6PrClu7SxtC3TbzSz30XZlzOjZukAKbowWtBHiJ36lG-a4U_5dYeM6CKUfdb7MaXesg8oLlZscBYO4fVVKMdcjn0NvtsvF-RfOVtu8tVFiOw6yvb3Rt1g-2xPBcrCEEn69L2z59SnUHY8pboO84aP6YBHHPhMHXw1Quz5J7KfGN3qlcX3kehRg0RIISJKLCdu87PnMhtcbODE0T15xmjyc1mUYKmjlmwghgZF4m-UzFoP/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > LinkedIn:
>>>> >> >>>>
>>>> >>
>>>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>>> >> >>>> >> >> > <
>>>> >> >>>> >> >>
>>>> >> >>>> >>
>>>> >> >>>>
>>>> >>
>>>> http://secure-web.cisco.com/1QlRJ-HwDhYoeQZGt2FCzKpzCEleTeJuBprI0G9qystL3HbJH4unSUkFhwBB5vlm1EWz9u50EG4S0Xnv38OXhu3-ioroUBcS0KG6x7V3cFf73lNR3mJnwnqVqzPtq9gIMtUxwnPPzS6sHVbJhDi2CyejXNt0HoO5oRi4T3Ruca3MN7ZxxXJd2gbyGVGryXBDFLrVBlg3KZ-3_m8AFoTvBpUvWv7fs0vGBQ2lWUXSoQ7JYARZ0vy5mW0a4kK2EzbxCWaOFLR6JcbDwA3T9BO006AtSM2onHVqveK_jx2VZB6CvZsLrR-VJ4j41A8IvYfuQ/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >> > This email message may contain legally privileged and/or
>>>> >> >>>> confidential
>>>> >> >>>> >> >> > information. If you are not the intended recipient(s),
>>>> or the
>>>> >> >>>> >> employee
>>>> >> >>>> >> >> or
>>>> >> >>>> >> >> > agent responsible for the delivery of this message to
>>>> the
>>>> >> >>>> intended
>>>> >> >>>> >> >> > recipient(s), you are hereby notified that any
>>>> disclosure,
>>>> >> >>>> copying,
>>>> >> >>>> >> >> > distribution, or use of this email message is
>>>> prohibited. If
>>>> >> >>>> you have
>>>> >> >>>> >> >> > received this message in error, please notify the sender
>>>> >> >>>> immediately
>>>> >> >>>> >> by
>>>> >> >>>> >> >> > e-mail and delete this email message from your computer.
>>>> >> Thank
>>>> >> >>>> you.
>>>> >> >>>> >> >> >
>>>> >> >>>> >> >>
>>>> >> >>>> >> >>
>>>> >> >>>> >> >> --
>>>> >> >>>> >> >> Cheers,
>>>> >> >>>> >> >> Sokratis Kariotis
>>>> >> >>>> >> >> PhD Student
>>>> >> >>>> >> >> University of Sheffield, Medical School
>>>> >> >>>> >> >> MedTech <
>>>> >> >>>>
>>>> >>
>>>> https://secure-web.cisco.com/1UZJHpVQsI8BfFPWhbq-J2rDlzAewQvgrzEc9WGdF_0K0yiBiLf-It8lbnJnE8RsNZOScd3XkvYSJDp2BZEA9qQ9SiKToJsRHBxjK2bfZLmwCkERBcmUFd9SdoMoB1G4RpEYZFB-1xVSxAPfdiIt_Y4pwfTBtitLHh35siIHmmWTxxGRMgWsScGr5LH7uzLXpK2aU1CTuzOreG-QdW1lDSHVyqJ3QZFGcdCaZ8o8f2qfBdk3hp6oJ7YYYPkFS_RJhwUgAJLPzKq_WYmrO-LvFJowXv0kL7-wJl2HP9iF0xxNvcUL0efR4AUskq7ASlnDR/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>>>> >> >>>> >President
>>>> >> >>>> >> >> Twitter: @s_kariotis <
>>>> >> >>>>
>>>> >>
>>>> https://secure-web.cisco.com/1wN6YWZ6TrhzA9-XXGwx2WH2adnYr6vcYZGm8DxTnJrVaf7YW-KRmE5ab_OSDfDVhgUW8-M1VUejquNFC3yAsUPME7S2r9j6tBNjLXFYXx8J9c7lM4zLP2wNEVZHJygxBPw07YN2qNuIgs3YofrxLiuV7448HJFjJ09yH48V9eyA7ztDFZRSEn7nQ9a_O7CKAqXvrPZMdXLYF4kDU_zF9fEIk_NR6ZufkBhNCGOhwZR4_BEAMgWPOP0GLYCw4cUOFpwIqJVyIBXHS6e2UQxY1SyxWqVcXkVU777qXzLQq5EKhFRgT-rCDt1yMB1edLRci/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>>> >> >>>> >
>>>> >> >>>> >> >> LinkedIn:
>>>> >> >>>>
>>>> >>
>>>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>>> >> >>>> >> >>
>>>> >> >>>> >> >>         [[alternative HTML version deleted]]
>>>> >> >>>> >> >>
>>>> >> >>>> >> >> _______________________________________________
>>>> >> >>>> >> >> Bioc-devel using r-project.org mailing list
>>>> >> >>>> >> >>
>>>> >> >>>>
>>>> >>
>>>> https://secure-web.cisco.com/1omxEHTcWtl70OI-olS1ZqcaCRnJ4Fn7rAOZql6D3Es1hQNXpincALWN16-MMRS_hcYMa7XUNWNQCDWa-yJRM9Or1QqEitc7eAog1lECwY8yt_AjStJOHx8TUjutJBmCBaHIs1nbvB72Xyq14CUD4hILYXxa5J9qaf6apAoHsaFb_le9kNegFnRdgd_7WnA4h4cLPzFKSGX8j_U9d9oi2YM_-o-LEuaPDyIoQFXJIlocCu-LFEdEXKtbxWR6MoieJHYi6HiiP8-P2z9lq9gzD1ouLSRo2a727ohZSf1SFNkG-fj_b-K2Sas8AxSr_eh2z/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>>> >> >>>> >> >>
>>>> >> >>>> >> >
>>>> >> >>>> >>
>>>> >> >>>> >> --
>>>> >> >>>> >> Cheers,
>>>> >> >>>> >> Sokratis Kariotis
>>>> >> >>>> >> PhD Student
>>>> >> >>>> >> University of Sheffield, Medical School
>>>> >> >>>> >> MedTech <
>>>> >> >>>>
>>>> >>
>>>> https://secure-web.cisco.com/1UZJHpVQsI8BfFPWhbq-J2rDlzAewQvgrzEc9WGdF_0K0yiBiLf-It8lbnJnE8RsNZOScd3XkvYSJDp2BZEA9qQ9SiKToJsRHBxjK2bfZLmwCkERBcmUFd9SdoMoB1G4RpEYZFB-1xVSxAPfdiIt_Y4pwfTBtitLHh35siIHmmWTxxGRMgWsScGr5LH7uzLXpK2aU1CTuzOreG-QdW1lDSHVyqJ3QZFGcdCaZ8o8f2qfBdk3hp6oJ7YYYPkFS_RJhwUgAJLPzKq_WYmrO-LvFJowXv0kL7-wJl2HP9iF0xxNvcUL0efR4AUskq7ASlnDR/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>>>> >> >>>> >President
>>>> >> >>>> >> Twitter: @s_kariotis <
>>>> >> >>>>
>>>> >>
>>>> https://secure-web.cisco.com/1wN6YWZ6TrhzA9-XXGwx2WH2adnYr6vcYZGm8DxTnJrVaf7YW-KRmE5ab_OSDfDVhgUW8-M1VUejquNFC3yAsUPME7S2r9j6tBNjLXFYXx8J9c7lM4zLP2wNEVZHJygxBPw07YN2qNuIgs3YofrxLiuV7448HJFjJ09yH48V9eyA7ztDFZRSEn7nQ9a_O7CKAqXvrPZMdXLYF4kDU_zF9fEIk_NR6ZufkBhNCGOhwZR4_BEAMgWPOP0GLYCw4cUOFpwIqJVyIBXHS6e2UQxY1SyxWqVcXkVU777qXzLQq5EKhFRgT-rCDt1yMB1edLRci/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>>> >> >>>> >
>>>> >> >>>> >> LinkedIn:
>>>> >> >>>>
>>>> >>
>>>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>>> >> >>>> >>
>>>> >> >>>> >>         [[alternative HTML version deleted]]
>>>> >> >>>> >>
>>>> >> >>>> >> _______________________________________________
>>>> >> >>>> >> Bioc-devel using r-project.org mailing list
>>>> >> >>>> >>
>>>> >> >>>>
>>>> >>
>>>> https://secure-web.cisco.com/1omxEHTcWtl70OI-olS1ZqcaCRnJ4Fn7rAOZql6D3Es1hQNXpincALWN16-MMRS_hcYMa7XUNWNQCDWa-yJRM9Or1QqEitc7eAog1lECwY8yt_AjStJOHx8TUjutJBmCBaHIs1nbvB72Xyq14CUD4hILYXxa5J9qaf6apAoHsaFb_le9kNegFnRdgd_7WnA4h4cLPzFKSGX8j_U9d9oi2YM_-o-LEuaPDyIoQFXJIlocCu-LFEdEXKtbxWR6MoieJHYi6HiiP8-P2z9lq9gzD1ouLSRo2a727ohZSf1SFNkG-fj_b-K2Sas8AxSr_eh2z/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>>> >> >>>> >>
>>>> >> >>>> >
>>>> >> >>>>
>>>> >> >>>>         [[alternative HTML version deleted]]
>>>> >> >>>>
>>>> >> >>>> _______________________________________________
>>>> >> >>>> Bioc-devel using r-project.org mailing list
>>>> >> >>>>
>>>> >> >>>>
>>>> >>
>>>> https://secure-web.cisco.com/1omxEHTcWtl70OI-olS1ZqcaCRnJ4Fn7rAOZql6D3Es1hQNXpincALWN16-MMRS_hcYMa7XUNWNQCDWa-yJRM9Or1QqEitc7eAog1lECwY8yt_AjStJOHx8TUjutJBmCBaHIs1nbvB72Xyq14CUD4hILYXxa5J9qaf6apAoHsaFb_le9kNegFnRdgd_7WnA4h4cLPzFKSGX8j_U9d9oi2YM_-o-LEuaPDyIoQFXJIlocCu-LFEdEXKtbxWR6MoieJHYi6HiiP8-P2z9lq9gzD1ouLSRo2a727ohZSf1SFNkG-fj_b-K2Sas8AxSr_eh2z/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>>> >> >>>>
>>>> >> >>>>
>>>> >> >>>> This email message may contain legally privileged and/or
>>>> confidential
>>>> >> >>>> information. If you are not the intended recipient(s), or the
>>>> >> employee or
>>>> >> >>>> agent responsible for the delivery of this message to the
>>>> intended
>>>> >> >>>> recipient(s), you are hereby notified that any disclosure,
>>>> copying,
>>>> >> >>>> distribution, or use of this email message is prohibited. If
>>>> you have
>>>> >> >>>> received this message in error, please notify the sender
>>>> immediately
>>>> >> by
>>>> >> >>>> e-mail and delete this email message from your computer. Thank
>>>> you.
>>>> >> >>>>
>>>> >> >>>
>>>> >> >>>
>>>> >> >>> --
>>>> >> >>> Cheers,
>>>> >> >>> Sokratis Kariotis
>>>> >> >>> PhD Student
>>>> >> >>> University of Sheffield, Medical School
>>>> >> >>> MedTech <https://www.facebook.com/medtechsheffield/>President
>>>> >> >>> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
>>>> >> >>> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>>>> >> >>>
>>>> >> >>
>>>> >> >>
>>>> >> >> --
>>>> >> >> Cheers,
>>>> >> >> Sokratis Kariotis
>>>> >> >> PhD Student
>>>> >> >> University of Sheffield, Medical School
>>>> >> >> MedTech <https://www.facebook.com/medtechsheffield/>President
>>>> >> >> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
>>>> >> >> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>>>> >> >>
>>>> >> >
>>>> >>
>>>> >> --
>>>> >> Cheers,
>>>> >> Sokratis Kariotis
>>>> >> PhD Student
>>>> >> University of Sheffield, Medical School
>>>> >> MedTech <https://www.facebook.com/medtechsheffield/>President
>>>> >> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
>>>> >> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>>>> >>
>>>> >>         [[alternative HTML version deleted]]
>>>> >>
>>>> >> _______________________________________________
>>>> >> Bioc-devel using r-project.org mailing list
>>>> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>> >>
>>>> >
>>>>
>>>> --
>>>> Cheers,
>>>> Sokratis Kariotis
>>>> PhD Student
>>>> University of Sheffield, Medical School
>>>> MedTech <https://www.facebook.com/medtechsheffield/>President
>>>> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
>>>> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>>>>
>>>>         [[alternative HTML version deleted]]
>>>>
>>>> _______________________________________________
>>>> Bioc-devel using r-project.org mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>>
>>>
>>
>> --
>> Cheers,
>> Sokratis Kariotis
>> PhD Student
>> University of Sheffield, Medical School
>> MedTech <https://www.facebook.com/medtechsheffield/>President
>> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
>> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>>
>
>
> --
> Cheers,
> Sokratis Kariotis
> PhD Student
> University of Sheffield, Medical School
> MedTech <https://www.facebook.com/medtechsheffield/>President
> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>


-- 
Cheers,
Sokratis Kariotis
PhD Student
University of Sheffield, Medical School
MedTech <https://www.facebook.com/medtechsheffield/>President
Twitter: @s_kariotis <https://twitter.com/s_kariotis>
LinkedIn: http://www.linkedin.com/in/sokratiskariotis

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