[Bioc-devel] Omada package failing due to removed dependency

Sokratis Kariotis @okr@t|@k@r|ot|@ @end|ng |rom gm@||@com
Tue Apr 2 05:06:26 CEST 2024 

Dear all,

I am getting some warnings that the Omada package is failing. If I am
correct I need to make some changes to both the devel and Release_3_18
branches. Because I am using a new laptop, could you let me know how to
make the necessary changes to fix both branches ( I mean how to connect and
upload my new code)? Thanks in advance!

Regards,
Dr. Sokratis Kariotis

On Fri, Feb 9, 2024 at 10:27 AM Sokratis Kariotis <
sokratiskariotis using gmail.com> wrote:

> Hey,
>
> Hope I find you well! I have pushed some changes in devel and (I believe)
> in branch RELEASE_3_18. Could you check if it was done correctly and
> whether it can reflect in the current available version? The updates were
> minor but required for journal publication. Thanks!
>
> Regards,
> Dr. Sokratis Kariotis
>
> On Wed, Sep 13, 2023 at 12:42 AM Lori Shepherd <shepherd.bioc using gmail.com>
> wrote:
>
>> It would be great if you were able to also update the current release
>> RELEASE_3_17 branch so that the current users can use the package and so
>> that a broken version of the package is not saved for the Bioc 3.17 version
>> of packages.  But the package will be ok for the new release as long as it
>> is fixed in devel and will progate the fixed package at the end of October
>> to the new release.
>>
>>
>>
>> Lori Shepherd - Kern
>>
>> Bioconductor Core Team
>>
>> Roswell Park Comprehensive Cancer Center
>>
>>
>> On Mon, Sep 11, 2023 at 10:05 PM Sokratis Kariotis <
>> sokratiskariotis using gmail.com> wrote:
>>
>>> Hey,
>>>
>>> Will the package be ok for the new release even though I still get the
>>> same
>>> error?
>>>
>>> Cheers,
>>> Sokratis
>>>
>>> On Thu, Aug 17, 2023 at 3:38 PM Mike Smith <grimbough using gmail.com> wrote:
>>>
>>> > Hi Sokratis,
>>> >
>>> > You've address the problems successfully in the devel branch (3.18) but
>>> > they remain in the release (3.17), so you're probably still getting the
>>> > messages relating to these builds (
>>> > https://bioconductor.org/checkResults/3.17/bioc-LATEST/omada/).
>>> >
>>> > To fix this you'll need to checkout the RELEASE_3_17 branch, and then
>>> make
>>> > the same changes you've already applied.  You can either do that via
>>> git
>>> > cherry-pick and select the appropriate commits from devel branch, or
>>> > perhaps more straightforward is to just copy/paste the relevant
>>> sections.
>>> > Then bump the RELEASE_3_17 version number to 1.2.1 and push that
>>> branch.
>>> > Hopefully this will fix the issues there too.
>>> >
>>> > Best,
>>> > Mike
>>> >
>>> > On Thu, 17 Aug 2023 at 03:47, Sokratis Kariotis <
>>> > sokratiskariotis using gmail.com> wrote:
>>> >
>>> >> Hey all,
>>> >>
>>> >> I can see all is green but I still get messages about failing builds
>>> and
>>> >> on
>>> >> the website shows build error. Do I still have to do something?
>>> Thanks in
>>> >> advance.
>>> >>
>>> >> Regards,
>>> >> Sokratis
>>> >>
>>> >> On Thu, Aug 10, 2023 at 2:53 PM Martin Grigorov <
>>> >> martin.grigorov using gmail.com>
>>> >> wrote:
>>> >>
>>> >> > Hi,
>>> >> >
>>> >> > All is green at
>>> >> > https://bioconductor.org/checkResults/3.18/bioc-LATEST/omada/
>>> >> >
>>> >> > Regards,
>>> >> > Martin
>>> >> >
>>> >> > On Thu, Aug 10, 2023 at 9:44 AM Sokratis Kariotis <
>>> >> > sokratiskariotis using gmail.com> wrote:
>>> >> >
>>> >> >> Hey all,
>>> >> >>
>>> >> >> Is this fixed now? I think I can see all pass, but on the actual
>>> >> website
>>> >> >> its still on error. Thanks!
>>> >> >>
>>> >> >> Cheers,
>>> >> >> Sokratis
>>> >> >>
>>> >> >> On Tue, Aug 1, 2023 at 4:25 PM Sokratis Kariotis <
>>> >> >> sokratiskariotis using gmail.com> wrote:
>>> >> >>
>>> >> >>> Hey,
>>> >> >>>
>>> >> >>> I believe I have resolved the conflicts and now can run: *git push
>>> >> >>> upstream main:devel*
>>> >> >>> with Everything up-to-date as a result. However, *git push origin
>>> >> main*
>>> >> >>> does not yield
>>> >> >>> anything and it keeps hanging without a message. I checked
>>> >> https://bioconductor.org/checkResults/3.18/bioc-LATEST/omada/
>>> >> >>> and the last commit is April.
>>> >> >>>
>>> >> >>>
>>> >> >>> On Mon, Jul 31, 2023 at 10:01 PM Kern, Lori <
>>> >> >>> Lori.Shepherd using roswellpark.org> wrote:
>>> >> >>>
>>> >> >>>> You'll need to find the merge conflicts and resolve them.
>>> Recommit
>>> >> >>>> those files and then it should go.
>>> >> >>>>
>>> >> >>>> Lori Shepherd - Kern
>>> >> >>>>
>>> >> >>>> Bioconductor Core Team
>>> >> >>>>
>>> >> >>>> Roswell Park Comprehensive Cancer Center
>>> >> >>>>
>>> >> >>>> Department of Biostatistics & Bioinformatics
>>> >> >>>>
>>> >> >>>> Elm & Carlton Streets
>>> >> >>>>
>>> >> >>>> Buffalo, New York 14263
>>> >> >>>> ------------------------------
>>> >> >>>> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf
>>> of
>>> >> >>>> Sokratis Kariotis <sokratiskariotis using gmail.com>
>>> >> >>>> *Sent:* Monday, July 31, 2023 7:27 AM
>>> >> >>>> *To:* Martin Grigorov <martin.grigorov using gmail.com>
>>> >> >>>> *Cc:* bioc-devel using r-project.org <bioc-devel using r-project.org>
>>> >> >>>> *Subject:* Re: [Bioc-devel] Omada package failing due to removed
>>> >> >>>> dependency
>>> >> >>>>
>>> >> >>>> Tried but its Already up to date.
>>> >> >>>>
>>> >> >>>> On Mon, 31 Jul 2023, 7:22 pm Martin Grigorov, <
>>> >> >>>> martin.grigorov using gmail.com>
>>> >> >>>> wrote:
>>> >> >>>>
>>> >> >>>> > Hi Sokratis,
>>> >> >>>> >
>>> >> >>>> > You need to do "git pull --rebase" before trying to push.
>>> >> >>>> > Most probably the version has been bumped upstream.
>>> >> >>>> >
>>> >> >>>> > Regards,
>>> >> >>>> > Martin
>>> >> >>>> >
>>> >> >>>> > On Mon, Jul 31, 2023 at 2:16 PM Sokratis Kariotis <
>>> >> >>>> > sokratiskariotis using gmail.com> wrote:
>>> >> >>>> >
>>> >> >>>> >> Hey all,
>>> >> >>>> >>
>>> >> >>>> >> I created a new key and now I can commit etc but there is a
>>> >> conflict
>>> >> >>>> that
>>> >> >>>> >> is not allowing me to go ahead.
>>> >> >>>> >>
>>> >> >>>> >> My commands:
>>> >> >>>> >> git add .
>>> >> >>>> >> git commit -m "Update metrics"
>>> >> >>>> >> git push upstream main:devel
>>> >> >>>> >>
>>> >> >>>> >> *The above results in the following error:*
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >> *Enumerating objects: 19, done.Counting objects: 100% (17/17),
>>> >> >>>> done.Delta
>>> >> >>>> >> compression using up to 16 threadsCompressing objects: 100%
>>> >> (11/11),
>>> >> >>>> >> done.Writing objects: 100% (11/11), 4.78 KiB | 4.78 MiB/s,
>>> >> >>>> done.Total 11
>>> >> >>>> >> (delta 7), reused 0 (delta 0), pack-reused 0remote: Error: You
>>> >> >>>> cannot push
>>> >> >>>> >> without resolving merge conflicts.remote:remote: Please check
>>> the
>>> >> >>>> files in
>>> >> >>>> >> the commit pushed to the git-serverremote: for merge conflict
>>> >> >>>> markers like
>>> >> >>>> >> '<<<<<<<', '========', '>>>>>>>'.remote:To
>>> >> >>>> >> git.bioconductor.org:packages/omada ! [remote rejected] main
>>> ->
>>> >> >>>> devel
>>> >> >>>> >> (pre-receive hook declined)error: failed to push some refs to
>>> >> >>>> >> 'git.bioconductor.org:packages/omada'*
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >>
>>> >> >>>> >> On Mon, Jul 31, 2023 at 3:36 PM Mike Smith <
>>> grimbough using gmail.com>
>>> >> >>>> wrote:
>>> >> >>>> >>
>>> >> >>>> >> > Hi Sokratis,
>>> >> >>>> >> >
>>> >> >>>> >> > Everything in Bioconductor is built around the central
>>> >> >>>> Bioconductor git
>>> >> >>>> >> > repositories.  The only way to get changes out to users is
>>> to
>>> >> >>>> commit
>>> >> >>>> >> them
>>> >> >>>> >> > to git.bioconductor.org and then the build system will pick
>>> >> those
>>> >> >>>> up,
>>> >> >>>> >> run
>>> >> >>>> >> > the tests and checks, create new versions of packages, and
>>> make
>>> >> >>>> them
>>> >> >>>> >> > available for distribution.
>>> >> >>>> >> >
>>> >> >>>> >> > Perhaps you can include the git command you're running to
>>> submit
>>> >> >>>> the
>>> >> >>>> >> > changes and a copy of the exact error you're receiving.
>>> That
>>> >> >>>> might help
>>> >> >>>> >> > the team suggest a solution.
>>> >> >>>> >> >
>>> >> >>>> >> > Best regards,
>>> >> >>>> >> > Mike
>>> >> >>>> >> >
>>> >> >>>> >> > On Fri, 28 Jul 2023 at 08:32, Sokratis Kariotis <
>>> >> >>>> >> > sokratiskariotis using gmail.com> wrote:
>>> >> >>>> >> >
>>> >> >>>> >> >> Hey both,
>>> >> >>>> >> >>
>>> >> >>>> >> >> I have edited the package code but I'm having some
>>> difficulties
>>> >> >>>> >> pushing it
>>> >> >>>> >> >> to trigger another build (github passphrase). Is there
>>> another
>>> >> >>>> way to
>>> >> >>>> >> >> trigger the build? Thanks!
>>> >> >>>> >> >>
>>> >> >>>> >> >> Cheers,
>>> >> >>>> >> >> Sokratis
>>> >> >>>> >> >>
>>> >> >>>> >> >> On Wed, Jul 12, 2023 at 1:43 AM Kern, Lori <
>>> >> >>>> >> Lori.Shepherd using roswellpark.org
>>> >> >>>> >> >> >
>>> >> >>>> >> >> wrote:
>>> >> >>>> >> >>
>>> >> >>>> >> >> > We can give you a little more time (a few weeks) to fix
>>> the
>>> >> >>>> package
>>> >> >>>> >> but
>>> >> >>>> >> >> > please fix as soon as possible to avoid deprecation.
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Cheers,
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Lori Shepherd - Kern
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Bioconductor Core Team
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Roswell Park Comprehensive Cancer Center
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Department of Biostatistics & Bioinformatics
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Elm & Carlton Streets
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Buffalo, New York 14263
>>> >> >>>> >> >> > ------------------------------
>>> >> >>>> >> >> > *From:* Sokratis Kariotis <sokratiskariotis using gmail.com>
>>> >> >>>> >> >> > *Sent:* Monday, July 10, 2023 10:27 AM
>>> >> >>>> >> >> > *To:* Kern, Lori <Lori.Shepherd using RoswellPark.org>
>>> >> >>>> >> >> > *Cc:* Oleksii Nikolaienko <oleksii.nikolaienko using gmail.com
>>> >;
>>> >> >>>> >> >> > bioc-devel using r-project.org <bioc-devel using r-project.org>
>>> >> >>>> >> >> > *Subject:* Re: [Bioc-devel] Omada package failing due to
>>> >> removed
>>> >> >>>> >> >> > dependency
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Hey both,
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > I have checked the package license (GPL) and it should be
>>> >> fine
>>> >> >>>> to use
>>> >> >>>> >> >> the
>>> >> >>>> >> >> > code. However, I am having difficulty finding the actual
>>> >> code to
>>> >> >>>> >> >> calculate
>>> >> >>>> >> >> > the internal metrics I am using (used in Omada's function
>>> >> >>>> >> >> > cluster_voting.R). I can only find the wrapper function
>>> but
>>> >> not
>>> >> >>>> the
>>> >> >>>> >> ones
>>> >> >>>> >> >> > that actually calculate the metrics. I am not sure how to
>>> >> >>>> proceed
>>> >> >>>> >> with
>>> >> >>>> >> >> this
>>> >> >>>> >> >> > in time, so the Omada package won't get deprecated.
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Regards,
>>> >> >>>> >> >> > Sokratis
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > On Fri, Jul 7, 2023 at 1:03 AM Kern, Lori <
>>> >> >>>> >> >> Lori.Shepherd using roswellpark.org>
>>> >> >>>> >> >> > wrote:
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > We would not hunt down the lab especially for CRAN
>>> packages,
>>> >> >>>> but you
>>> >> >>>> >> >> > could reach out if you like.  That would probably be a
>>> >> >>>> recommended
>>> >> >>>> >> >> action
>>> >> >>>> >> >> > to either ask someone from their lab to maintain or if
>>> you
>>> >> are
>>> >> >>>> >> willing
>>> >> >>>> >> >> and
>>> >> >>>> >> >> > you really want the package around you could ask the lab
>>> if
>>> >> >>>> they mind
>>> >> >>>> >> >> you
>>> >> >>>> >> >> > volunteering to be the new maintainer.
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > There could see two options for rewriting/maintaining.
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > 1. Take over maintenance of the package and resubmit to
>>> CRAN
>>> >> >>>> >> >> > It's a little tricky cause this is a CRAN package so I'm
>>> not
>>> >> >>>> sure on
>>> >> >>>> >> >> their
>>> >> >>>> >> >> > exact policy of taking over an abandoned package. If
>>> this is
>>> >> >>>> >> desired,  I
>>> >> >>>> >> >> > would reach out to CRAN to find out their exact policy
>>> >> >>>> >> >> > 2. Move needed code to your Bioconductor package
>>> >> >>>> >> >> > You'll have to check the original package license to make
>>> >> sure
>>> >> >>>> this
>>> >> >>>> >> is
>>> >> >>>> >> >> > allowed under the license of the package. You will still
>>> want
>>> >> >>>> to give
>>> >> >>>> >> >> the
>>> >> >>>> >> >> > original authors/maintainer credit. I would say to be
>>> safe I
>>> >> >>>> would
>>> >> >>>> >> >> include
>>> >> >>>> >> >> > them as contributors/authors in the DESCRITPION Authors using R
>>> >> >>>> field and
>>> >> >>>> >> in
>>> >> >>>> >> >> > the R code I would add a comment above the code to
>>> reference
>>> >> >>>> original
>>> >> >>>> >> >> > package citation and stating it was copied from there.
>>> I'm
>>> >> not
>>> >> >>>> a
>>> >> >>>> >> >> lawyer or
>>> >> >>>> >> >> > license/copy right expert so not sure if that would be
>>> good
>>> >> >>>> enough
>>> >> >>>> >> but
>>> >> >>>> >> >> that
>>> >> >>>> >> >> > would be my take on it.
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Lori Shepherd - Kern
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Bioconductor Core Team
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Roswell Park Comprehensive Cancer Center
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Department of Biostatistics & Bioinformatics
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Elm & Carlton Streets
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Buffalo, New York 14263
>>> >> >>>> >> >> > ------------------------------
>>> >> >>>> >> >> > *From:* Oleksii Nikolaienko <
>>> oleksii.nikolaienko using gmail.com>
>>> >> >>>> >> >> > *Sent:* Thursday, July 6, 2023 1:58 AM
>>> >> >>>> >> >> > *To:* Sokratis Kariotis <sokratiskariotis using gmail.com>
>>> >> >>>> >> >> > *Cc:* Kern, Lori <Lori.Shepherd using RoswellPark.org>;
>>> >> >>>> >> >> bioc-devel using r-project.org
>>> >> >>>> >> >> > <bioc-devel using r-project.org>
>>> >> >>>> >> >> > *Subject:* Re: [Bioc-devel] Omada package failing due to
>>> >> removed
>>> >> >>>> >> >> > dependency
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1EhksuB6k_yI--kj3_CN8LCovo7wAy9Epj-_8W4VV7FAbktome6nKnRrktDrrzsGXq6OrPZzxo7-CPAnrnZ4mFbi1Z-z81fIELFunE2pI8wuUlGU72f4Irnh1TjSXymZHtkM8_5OEv8EPAA1U7i6tUetGY5G8ZODgjnDQZaarKkEspvU92RNlxjLqzIKy-vIrX-TN-TtC-dDyaqOyIVUNZKJws7sU-V4VFjfkwoM5rK9BAdI4jIqcxygwdSeB5XsZftYZVy7nlTD1Rrp46lnGBMqvfBpVOQjd93wM9KQU1nafzbzIag4rrGGGlr_D4ZWB/https%3A%2F%2Fnonstationarity.sciencesconf.org%2Fresource%2Fpage%2Fid%2F7
>>> >> >>>> >> >> > <
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1pCvxIL3lfzw2yMAoq1pXQ5JiavYeyZHI2qtDauHw4xwZZBxaV-dAKGWcVKgwz09vF4YJJGVvkcQloDj0mJOUxj7BI3WPu_1Ze3vDW0a9syxuRsiQNOGsRkJ8BaWBdlxOdRBAw39KujDDGqb_DPfL6IsjHK5UCqoCpzw39GduVcBLFIutoPM8Nqjgp8ArDuh-oK-Bxe-huDYCoLXUX5GyU_fEG81AEtF-osCFtJNLRiQBggrsxcViF8mNihzVj8-UT4cNawHmz7xye_KNs45WZOxnVljiq5QQHuIGCeXRkbYBUvrpcEoTootlVxLloYK0/https%3A%2F%2Fnonstationarity.sciencesconf.org%2Fresource%2Fpage%2Fid%2F7
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > That is, perhaps, not surprising...
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Package seems to be too good to be abandoned. I wonder if
>>> >> >>>> anyone from
>>> >> >>>> >> >> > their lab
>>> >> >>>> >> >> > <
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1IisY82Mh0-7_0tTgq7v7MgjvGFKIBucg15oqE_SNpUPzwuvYYaCPgz427Efo9Xga7j3PYM6msIsM8GJAK7ofsjmhrfAG3_kBGCmTdF0gVYBUz17CdZjNygLUpDMXPSt6h5CfKAjX_SrymhwTWvvEuyH1cH3nCYhVkVd5xfdd2W5azA0g9MJ4bPASnxJwY9quFxu_6CAIuYXkkO_DqiO9NC6Nb22USMev1V4qh5A3IX2kg6l60sRbM9gDQWjNwbJAPSnWq9G5setIw9CNP8avnjON5nhm_cjNhhn6s6kY07wwiSQ4sSQqsekskzOjhbm1/https%3A%2F%2Fmodalx.parisnanterre.fr%2Fmembres
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > could take over maintenance, if you still bother to
>>> ask...
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Best,
>>> >> >>>> >> >> > Oleksii
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > On Thu, 6 Jul 2023 at 06:23, Sokratis Kariotis <
>>> >> >>>> >> >> sokratiskariotis using gmail.com>
>>> >> >>>> >> >> > wrote:
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Hey,
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > I haven't received any responses from the maintainer of
>>> >> >>>> ClusterCrit
>>> >> >>>> >> so I
>>> >> >>>> >> >> > guess I will have to re-write the code used. How can I
>>> >> properly
>>> >> >>>> go
>>> >> >>>> >> about
>>> >> >>>> >> >> > this and credit the authors as well? Thanks!
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Cheers,
>>> >> >>>> >> >> > Sokratis
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > On Thu, Jun 29, 2023 at 7:38 PM Kern, Lori <
>>> >> >>>> >> >> Lori.Shepherd using roswellpark.org>
>>> >> >>>> >> >> > wrote:
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > We do not allow archived packages to be used.  All
>>> >> dependencies
>>> >> >>>> must
>>> >> >>>> >> be
>>> >> >>>> >> >> on
>>> >> >>>> >> >> > CRAN or Bioconductor. So yes if you can get them to
>>> reinstate
>>> >> >>>> the
>>> >> >>>> >> >> package
>>> >> >>>> >> >> > on CRAN that would be ideal.  If not you will have to
>>> remove
>>> >> the
>>> >> >>>> >> package
>>> >> >>>> >> >> > from the dependency list and either re-write the code
>>> used
>>> >> >>>> (giving
>>> >> >>>> >> >> original
>>> >> >>>> >> >> > clusterCrit authors credit) or remove the functionality
>>> used
>>> >> >>>> from
>>> >> >>>> >> that
>>> >> >>>> >> >> > package.
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Lori Shepherd - Kern
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Bioconductor Core Team
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Roswell Park Comprehensive Cancer Center
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Department of Biostatistics & Bioinformatics
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Elm & Carlton Streets
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Buffalo, New York 14263
>>> >> >>>> >> >> > ------------------------------
>>> >> >>>> >> >> > *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on
>>> >> >>>> behalf of
>>> >> >>>> >> >> > Oleksii Nikolaienko <oleksii.nikolaienko using gmail.com>
>>> >> >>>> >> >> > *Sent:* Thursday, June 29, 2023 5:36 AM
>>> >> >>>> >> >> > *To:* Sokratis Kariotis <sokratiskariotis using gmail.com>
>>> >> >>>> >> >> > *Cc:* bioc-devel using r-project.org <bioc-devel using r-project.org
>>> >
>>> >> >>>> >> >> > *Subject:* Re: [Bioc-devel] Omada package failing due to
>>> >> removed
>>> >> >>>> >> >> > dependency
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Hi,
>>> >> >>>> >> >> > in this case maybe it's worth reaching out to the
>>> maintainer
>>> >> of
>>> >> >>>> >> >> > clusterCrit. It was removed from CRAN because of
>>> >> (seems-to-be)
>>> >> >>>> minor
>>> >> >>>> >> >> > warnings, which can be addressed by the clusterCrit
>>> developer
>>> >> >>>> in no
>>> >> >>>> >> >> time...
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > Best,
>>> >> >>>> >> >> > Oleksii
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > On Thu, 29 Jun 2023 at 08:44, Sokratis Kariotis <
>>> >> >>>> >> >> > sokratiskariotis using gmail.com>
>>> >> >>>> >> >> > wrote:
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > > Dear Bioconductor team,
>>> >> >>>> >> >> > >
>>> >> >>>> >> >> > > I received an email that my package "Omada" is failing
>>> in
>>> >> >>>> release
>>> >> >>>> >> and
>>> >> >>>> >> >> > > devel. I had a look and the problem seems to be:
>>> *ERROR:
>>> >> >>>> dependency
>>> >> >>>> >> >> > > ‘clusterCrit’ is not available for package ‘omada’*.
>>> So the
>>> >> >>>> package
>>> >> >>>> >> >> > > clusterCrit was removed. Is there a way I can use a
>>> >> archived
>>> >> >>>> >> version
>>> >> >>>> >> >> of
>>> >> >>>> >> >> > it
>>> >> >>>> >> >> > > (or something similar) so I don't have to rewrite code
>>> >> based
>>> >> >>>> on new
>>> >> >>>> >> >> > > packages to avoid potentially inconsistencies? Please
>>> >> advise,
>>> >> >>>> thank
>>> >> >>>> >> >> you!
>>> >> >>>> >> >> > >
>>> >> >>>> >> >> > > Cheers,
>>> >> >>>> >> >> > > Dr. Sokratis Kariotis (PhD)
>>> >> >>>> >> >> > > Agency for Science, Technology and Research (A*STAR)
>>> >> >>>> >> >> > > Singapore Immunology Network (SIgN)
>>> >> >>>> >> >> > > Twitter: @s_kariotis <
>>> >> >>>> >> >> >
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1EqWv8V2N5hRbw3HmoPEY8RdpEeWxqDoUa71DV8jQUiygXZiRjRxTOSFFWWDUSN7nw3Aviue7E_1xQuvbY4J8O3un4nvR0wtrlQUjMbs1vFGt5o9bI_InwlMvRWb2dhIe9ic0_2ugbdCwXwW_RGN1G4LJxUxm_yO9EkGSnc10bfG2fjit4oALm7Y8gMqnFusMJfqR3j-IKbu0Hem-jPRYXIeAurGmn1l7FvPYk9Pi6MHnOl1RN-5x19R655qOhP8vtsh9q-qwvckAbwuklQvq6lo0zKstGTdB6JkFCIIHswJrur4WrdjGMtwrYkWwOAQs/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>> >> >>>> >> >> > >
>>> >> >>>> >> >> > > LinkedIn:
>>> >> >>>> >> >> >
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> http://secure-web.cisco.com/1hrH0VDgCpCKm6BWl_eP9v57iZE2j6Y9RUetJ4RMrKylsFeYV7AWyeBfOewj6SpLxhrD-_JnI4sPdaUJB9Mwxuj-B5ot2FZIu4AU87ty04CdxW8zw9DShqtsaZPm68os9ySeI12kEcN_iujEcY11StQo1_qKeBsQchHO3Vc_qvfAbA2T29jSt4KX0OnG4UZENEfns3cigBqNgiYMOOiCGmz01_nIY5M3cgVbsTmSNA-pov7ZD6si4bOXF6pt-manBCeK0NB13icO5MMlpc8HNxSqkARD7n-R71Sa3ZsGQOIYPgA0uuuIRAR9DbV_F5kSj/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >> >>>> >> >> > >
>>> >> >>>> >> >> > >         [[alternative HTML version deleted]]
>>> >> >>>> >> >> > >
>>> >> >>>> >> >> > > _______________________________________________
>>> >> >>>> >> >> > > Bioc-devel using r-project.org mailing list
>>> >> >>>> >> >> > >
>>> >> >>>> >> >> >
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1CoMZlPPSNe-MfqZkOpNFvpMkwbnIVkEbPIxbET9FKoHMGCVzTeeTdPJGpD4PHivCSzZwalSMt8BeA1_Ab8Pa5gS2jCkg9_onfbYE3UAgbywg5GD1CrAN86qgN8FH4tjTwPBq95yDFIvYCamr14TUrSDkZKUvFhtAw7FR6bpJ_Ub9z2fU6f-G3Xw_FHRqcg6aM9xrpq4GmnfMOKO_Jlf10TJsdvhdReM9Phw2lV_EMy55ZjFYD5bteCpN4_qqRQb4_J6IbFYjlRQEi1A0DiwxC67Gzaf0QPTRszxXRxqPy4oancisQKzNmQJod-2cz9Oa/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>> >> >>>> >> >> > >
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >         [[alternative HTML version deleted]]
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > _______________________________________________
>>> >> >>>> >> >> > Bioc-devel using r-project.org mailing list
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1CoMZlPPSNe-MfqZkOpNFvpMkwbnIVkEbPIxbET9FKoHMGCVzTeeTdPJGpD4PHivCSzZwalSMt8BeA1_Ab8Pa5gS2jCkg9_onfbYE3UAgbywg5GD1CrAN86qgN8FH4tjTwPBq95yDFIvYCamr14TUrSDkZKUvFhtAw7FR6bpJ_Ub9z2fU6f-G3Xw_FHRqcg6aM9xrpq4GmnfMOKO_Jlf10TJsdvhdReM9Phw2lV_EMy55ZjFYD5bteCpN4_qqRQb4_J6IbFYjlRQEi1A0DiwxC67Gzaf0QPTRszxXRxqPy4oancisQKzNmQJod-2cz9Oa/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > This email message may contain legally privileged and/or
>>> >> >>>> confidential
>>> >> >>>> >> >> > information. If you are not the intended recipient(s),
>>> or the
>>> >> >>>> >> employee
>>> >> >>>> >> >> or
>>> >> >>>> >> >> > agent responsible for the delivery of this message to the
>>> >> >>>> intended
>>> >> >>>> >> >> > recipient(s), you are hereby notified that any
>>> disclosure,
>>> >> >>>> copying,
>>> >> >>>> >> >> > distribution, or use of this email message is
>>> prohibited. If
>>> >> >>>> you have
>>> >> >>>> >> >> > received this message in error, please notify the sender
>>> >> >>>> immediately
>>> >> >>>> >> by
>>> >> >>>> >> >> > e-mail and delete this email message from your computer.
>>> >> Thank
>>> >> >>>> you.
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > --
>>> >> >>>> >> >> > Cheers,
>>> >> >>>> >> >> > Sokratis Kariotis
>>> >> >>>> >> >> > PhD Student
>>> >> >>>> >> >> > University of Sheffield, Medical School
>>> >> >>>> >> >> > MedTech
>>> >> >>>> >> >> > <
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1j_t_6XlNHmK_Mlrd4WRabc9QOpzT2OGES5vH7ZXf-zkhvpeT6fGj6r1c6HMwcYrnxIzGZ6HwikAhhXIh8OkaEgWqigSPXAd_m0NPSjZf7cr7xi4b003k8sYSFAOfwcStP8WCMJQEHURgiHkNDvUmrUdfJYydQO9lMNOyfaP6SnxI2mQX21fOBWIj5wlIAVh9_pBFujbt_XfCBhHL495EtB_s0ntbiowBalE7bhEa4FullCdFTSex4VfICmSriWx91cSPmk1TzmAHv6KZtr7XqAgLH4OzGlGEUTMdjmcrYOoLTC5XpKAljIZMsCwu8hDP/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > President
>>> >> >>>> >> >> > Twitter: @s_kariotis
>>> >> >>>> >> >> > <
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/13IN8xWDrADy-iyp1mknOrX5y2tJixhXPBcywL3EoIE7tOUCkSYs7hbAy2slZfzwMH3Bq9AnScXs3HK_KnDOO2kihBQdfM9nIHxnoa1vAkVFfYH8L_ns7w9KGqC0pzUOOxThE_ZMGVWk1LyQyf-RPrv_HY7RqQZo1IEYNirDTKWBu2lkLCH8qvs8lRMm79wx5eRwdZVYNH0uq7g7EcP_vvK9d8vQ534dzt0hOgHaDByQVi2reoXzwifR0pOYP-6LhdI15nbDtZHxMBmTvueysM77gfHBn7_IUHK6y9-biSIidTmH3GlJMkhk83x7UR5Jk/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > LinkedIn:
>>> >> >>>>
>>> >>
>>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >> >>>> >> >> > <
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> http://secure-web.cisco.com/1h1oCsLmDI6MQdDDyPKrhabJrDBtBogVZA8wMdTLiZENtCtnsB9UQqak12XHMegX9sP0mimjSxawrR5u0VlKLv-D4lrX8u8A05PST1zfXM9VJX6E41Hj2-TOTZm9uOWc8hfxBrCT6UPjQ0X5pFh0sQRgC5tqu2Ks1EALVXZvSixGddS_zQ2C0bQhnc9KLJe8J3jtxPOkUz7QqCjcwpfgixL9ls_ysxmn2OGFxfiMwTmWgUXWcfWwvOXy6OhfeAl_IDK9USdONEsQETuVSgt7f2eVi5DJJBy_4eVwIVz3GV6iTGr2VjRBlh98HxZMAr-iP/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > This email message may contain legally privileged and/or
>>> >> >>>> confidential
>>> >> >>>> >> >> > information. If you are not the intended recipient(s),
>>> or the
>>> >> >>>> >> employee
>>> >> >>>> >> >> or
>>> >> >>>> >> >> > agent responsible for the delivery of this message to the
>>> >> >>>> intended
>>> >> >>>> >> >> > recipient(s), you are hereby notified that any
>>> disclosure,
>>> >> >>>> copying,
>>> >> >>>> >> >> > distribution, or use of this email message is
>>> prohibited. If
>>> >> >>>> you have
>>> >> >>>> >> >> > received this message in error, please notify the sender
>>> >> >>>> immediately
>>> >> >>>> >> by
>>> >> >>>> >> >> > e-mail and delete this email message from your computer.
>>> >> Thank
>>> >> >>>> you.
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > --
>>> >> >>>> >> >> > Cheers,
>>> >> >>>> >> >> > Sokratis Kariotis
>>> >> >>>> >> >> > PhD Student
>>> >> >>>> >> >> > University of Sheffield, Medical School
>>> >> >>>> >> >> > MedTech
>>> >> >>>> >> >> > <
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1EbU56JtxgdwdoJoUZSkRfzViaYzT5UpVv7Wn4bHXpw7_iNUn_et52ACzsUWbzs2Du309DRo4wtQgGcVuDWVIPx5vtUsOovTfb6A-HIBq3NSje0v9lBELQCeYZvBzjm0t2kAdce_aXnf8m3mH7-cYUd0C6Wu2R7erAmQwuoI22clJuDcztgq-JhMyIczKcN_UhCUNAzJ-b_kHKI3mxzoO76dg0N8g2MIp_pHBC3x0rVQno00wElfOCtr3poLLQZwpcZCTPoAQmYs-Dfin4Lwoy2-B9Qn5txtHoCygaeneDxgiTHVOAuILij26i2Q9cgAQ/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > President
>>> >> >>>> >> >> > Twitter: @s_kariotis
>>> >> >>>> >> >> > <
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1RhhMUBj_mRXVHCOKQB6We-WITw332tSjBMu7_BVsJxiUs4tE1EO3zyDwMwygB4WIh8AaEo6gPZZcTCl81Qy6PrClu7SxtC3TbzSz30XZlzOjZukAKbowWtBHiJ36lG-a4U_5dYeM6CKUfdb7MaXesg8oLlZscBYO4fVVKMdcjn0NvtsvF-RfOVtu8tVFiOw6yvb3Rt1g-2xPBcrCEEn69L2z59SnUHY8pboO84aP6YBHHPhMHXw1Quz5J7KfGN3qlcX3kehRg0RIISJKLCdu87PnMhtcbODE0T15xmjyc1mUYKmjlmwghgZF4m-UzFoP/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > LinkedIn:
>>> >> >>>>
>>> >>
>>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >> >>>> >> >> > <
>>> >> >>>> >> >>
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> http://secure-web.cisco.com/1QlRJ-HwDhYoeQZGt2FCzKpzCEleTeJuBprI0G9qystL3HbJH4unSUkFhwBB5vlm1EWz9u50EG4S0Xnv38OXhu3-ioroUBcS0KG6x7V3cFf73lNR3mJnwnqVqzPtq9gIMtUxwnPPzS6sHVbJhDi2CyejXNt0HoO5oRi4T3Ruca3MN7ZxxXJd2gbyGVGryXBDFLrVBlg3KZ-3_m8AFoTvBpUvWv7fs0vGBQ2lWUXSoQ7JYARZ0vy5mW0a4kK2EzbxCWaOFLR6JcbDwA3T9BO006AtSM2onHVqveK_jx2VZB6CvZsLrR-VJ4j41A8IvYfuQ/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >> >>>> >> >> >
>>> >> >>>> >> >> >
>>> >> >>>> >> >> > This email message may contain legally privileged and/or
>>> >> >>>> confidential
>>> >> >>>> >> >> > information. If you are not the intended recipient(s),
>>> or the
>>> >> >>>> >> employee
>>> >> >>>> >> >> or
>>> >> >>>> >> >> > agent responsible for the delivery of this message to the
>>> >> >>>> intended
>>> >> >>>> >> >> > recipient(s), you are hereby notified that any
>>> disclosure,
>>> >> >>>> copying,
>>> >> >>>> >> >> > distribution, or use of this email message is
>>> prohibited. If
>>> >> >>>> you have
>>> >> >>>> >> >> > received this message in error, please notify the sender
>>> >> >>>> immediately
>>> >> >>>> >> by
>>> >> >>>> >> >> > e-mail and delete this email message from your computer.
>>> >> Thank
>>> >> >>>> you.
>>> >> >>>> >> >> >
>>> >> >>>> >> >>
>>> >> >>>> >> >>
>>> >> >>>> >> >> --
>>> >> >>>> >> >> Cheers,
>>> >> >>>> >> >> Sokratis Kariotis
>>> >> >>>> >> >> PhD Student
>>> >> >>>> >> >> University of Sheffield, Medical School
>>> >> >>>> >> >> MedTech <
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1UZJHpVQsI8BfFPWhbq-J2rDlzAewQvgrzEc9WGdF_0K0yiBiLf-It8lbnJnE8RsNZOScd3XkvYSJDp2BZEA9qQ9SiKToJsRHBxjK2bfZLmwCkERBcmUFd9SdoMoB1G4RpEYZFB-1xVSxAPfdiIt_Y4pwfTBtitLHh35siIHmmWTxxGRMgWsScGr5LH7uzLXpK2aU1CTuzOreG-QdW1lDSHVyqJ3QZFGcdCaZ8o8f2qfBdk3hp6oJ7YYYPkFS_RJhwUgAJLPzKq_WYmrO-LvFJowXv0kL7-wJl2HP9iF0xxNvcUL0efR4AUskq7ASlnDR/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>>> >> >>>> >President
>>> >> >>>> >> >> Twitter: @s_kariotis <
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1wN6YWZ6TrhzA9-XXGwx2WH2adnYr6vcYZGm8DxTnJrVaf7YW-KRmE5ab_OSDfDVhgUW8-M1VUejquNFC3yAsUPME7S2r9j6tBNjLXFYXx8J9c7lM4zLP2wNEVZHJygxBPw07YN2qNuIgs3YofrxLiuV7448HJFjJ09yH48V9eyA7ztDFZRSEn7nQ9a_O7CKAqXvrPZMdXLYF4kDU_zF9fEIk_NR6ZufkBhNCGOhwZR4_BEAMgWPOP0GLYCw4cUOFpwIqJVyIBXHS6e2UQxY1SyxWqVcXkVU777qXzLQq5EKhFRgT-rCDt1yMB1edLRci/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>> >> >>>> >
>>> >> >>>> >> >> LinkedIn:
>>> >> >>>>
>>> >>
>>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >> >>>> >> >>
>>> >> >>>> >> >>         [[alternative HTML version deleted]]
>>> >> >>>> >> >>
>>> >> >>>> >> >> _______________________________________________
>>> >> >>>> >> >> Bioc-devel using r-project.org mailing list
>>> >> >>>> >> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1omxEHTcWtl70OI-olS1ZqcaCRnJ4Fn7rAOZql6D3Es1hQNXpincALWN16-MMRS_hcYMa7XUNWNQCDWa-yJRM9Or1QqEitc7eAog1lECwY8yt_AjStJOHx8TUjutJBmCBaHIs1nbvB72Xyq14CUD4hILYXxa5J9qaf6apAoHsaFb_le9kNegFnRdgd_7WnA4h4cLPzFKSGX8j_U9d9oi2YM_-o-LEuaPDyIoQFXJIlocCu-LFEdEXKtbxWR6MoieJHYi6HiiP8-P2z9lq9gzD1ouLSRo2a727ohZSf1SFNkG-fj_b-K2Sas8AxSr_eh2z/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>> >> >>>> >> >>
>>> >> >>>> >> >
>>> >> >>>> >>
>>> >> >>>> >> --
>>> >> >>>> >> Cheers,
>>> >> >>>> >> Sokratis Kariotis
>>> >> >>>> >> PhD Student
>>> >> >>>> >> University of Sheffield, Medical School
>>> >> >>>> >> MedTech <
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1UZJHpVQsI8BfFPWhbq-J2rDlzAewQvgrzEc9WGdF_0K0yiBiLf-It8lbnJnE8RsNZOScd3XkvYSJDp2BZEA9qQ9SiKToJsRHBxjK2bfZLmwCkERBcmUFd9SdoMoB1G4RpEYZFB-1xVSxAPfdiIt_Y4pwfTBtitLHh35siIHmmWTxxGRMgWsScGr5LH7uzLXpK2aU1CTuzOreG-QdW1lDSHVyqJ3QZFGcdCaZ8o8f2qfBdk3hp6oJ7YYYPkFS_RJhwUgAJLPzKq_WYmrO-LvFJowXv0kL7-wJl2HP9iF0xxNvcUL0efR4AUskq7ASlnDR/https%3A%2F%2Fwww.facebook.com%2Fmedtechsheffield%2F
>>> >> >>>> >President
>>> >> >>>> >> Twitter: @s_kariotis <
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1wN6YWZ6TrhzA9-XXGwx2WH2adnYr6vcYZGm8DxTnJrVaf7YW-KRmE5ab_OSDfDVhgUW8-M1VUejquNFC3yAsUPME7S2r9j6tBNjLXFYXx8J9c7lM4zLP2wNEVZHJygxBPw07YN2qNuIgs3YofrxLiuV7448HJFjJ09yH48V9eyA7ztDFZRSEn7nQ9a_O7CKAqXvrPZMdXLYF4kDU_zF9fEIk_NR6ZufkBhNCGOhwZR4_BEAMgWPOP0GLYCw4cUOFpwIqJVyIBXHS6e2UQxY1SyxWqVcXkVU777qXzLQq5EKhFRgT-rCDt1yMB1edLRci/https%3A%2F%2Ftwitter.com%2Fs_kariotis
>>> >> >>>> >
>>> >> >>>> >> LinkedIn:
>>> >> >>>>
>>> >>
>>> http://secure-web.cisco.com/1nI19pW3ICZ1hk_IVzt7VlU1NDTaT8xDl7lxbbA0_pcu6Krot_h7i4pFmb7XK6HU91_jSzusYJ17TVrz8IKViTCDf7Pi9ghcYil0SE-r4kPMOw69K_lwjejNNpFxoC9zsWBnVOJtmWXbe-_O6T8I7wB3MbwearMr_myd9D3fGhuTnVuFteHLDyYe60b2DE4do9HARpQEdL_K6U--3f0ipONofYwTtfiEphi9VJ2IQ8BE9r6Rref9m_jtc3_ZdSVcOzWNSt3qSQRXtWE-o6A63kf0a92EmMG8h7ERpZChslXjk-6ZWT2sMcsWzi5Odotr_/http%3A%2F%2Fwww.linkedin.com%2Fin%2Fsokratiskariotis
>>> >> >>>> >>
>>> >> >>>> >>         [[alternative HTML version deleted]]
>>> >> >>>> >>
>>> >> >>>> >> _______________________________________________
>>> >> >>>> >> Bioc-devel using r-project.org mailing list
>>> >> >>>> >>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1omxEHTcWtl70OI-olS1ZqcaCRnJ4Fn7rAOZql6D3Es1hQNXpincALWN16-MMRS_hcYMa7XUNWNQCDWa-yJRM9Or1QqEitc7eAog1lECwY8yt_AjStJOHx8TUjutJBmCBaHIs1nbvB72Xyq14CUD4hILYXxa5J9qaf6apAoHsaFb_le9kNegFnRdgd_7WnA4h4cLPzFKSGX8j_U9d9oi2YM_-o-LEuaPDyIoQFXJIlocCu-LFEdEXKtbxWR6MoieJHYi6HiiP8-P2z9lq9gzD1ouLSRo2a727ohZSf1SFNkG-fj_b-K2Sas8AxSr_eh2z/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>> >> >>>> >>
>>> >> >>>> >
>>> >> >>>>
>>> >> >>>>         [[alternative HTML version deleted]]
>>> >> >>>>
>>> >> >>>> _______________________________________________
>>> >> >>>> Bioc-devel using r-project.org mailing list
>>> >> >>>>
>>> >> >>>>
>>> >>
>>> https://secure-web.cisco.com/1omxEHTcWtl70OI-olS1ZqcaCRnJ4Fn7rAOZql6D3Es1hQNXpincALWN16-MMRS_hcYMa7XUNWNQCDWa-yJRM9Or1QqEitc7eAog1lECwY8yt_AjStJOHx8TUjutJBmCBaHIs1nbvB72Xyq14CUD4hILYXxa5J9qaf6apAoHsaFb_le9kNegFnRdgd_7WnA4h4cLPzFKSGX8j_U9d9oi2YM_-o-LEuaPDyIoQFXJIlocCu-LFEdEXKtbxWR6MoieJHYi6HiiP8-P2z9lq9gzD1ouLSRo2a727ohZSf1SFNkG-fj_b-K2Sas8AxSr_eh2z/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>>> >> >>>>
>>> >> >>>>
>>> >> >>>> This email message may contain legally privileged and/or
>>> confidential
>>> >> >>>> information. If you are not the intended recipient(s), or the
>>> >> employee or
>>> >> >>>> agent responsible for the delivery of this message to the
>>> intended
>>> >> >>>> recipient(s), you are hereby notified that any disclosure,
>>> copying,
>>> >> >>>> distribution, or use of this email message is prohibited. If you
>>> have
>>> >> >>>> received this message in error, please notify the sender
>>> immediately
>>> >> by
>>> >> >>>> e-mail and delete this email message from your computer. Thank
>>> you.
>>> >> >>>>
>>> >> >>>
>>> >> >>>
>>> >> >>> --
>>> >> >>> Cheers,
>>> >> >>> Sokratis Kariotis
>>> >> >>> PhD Student
>>> >> >>> University of Sheffield, Medical School
>>> >> >>> MedTech <https://www.facebook.com/medtechsheffield/>President
>>> >> >>> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
>>> >> >>> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>>> >> >>>
>>> >> >>
>>> >> >>
>>> >> >> --
>>> >> >> Cheers,
>>> >> >> Sokratis Kariotis
>>> >> >> PhD Student
>>> >> >> University of Sheffield, Medical School
>>> >> >> MedTech <https://www.facebook.com/medtechsheffield/>President
>>> >> >> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
>>> >> >> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>>> >> >>
>>> >> >
>>> >>
>>> >> --
>>> >> Cheers,
>>> >> Sokratis Kariotis
>>> >> PhD Student
>>> >> University of Sheffield, Medical School
>>> >> MedTech <https://www.facebook.com/medtechsheffield/>President
>>> >> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
>>> >> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>>> >>
>>> >>         [[alternative HTML version deleted]]
>>> >>
>>> >> _______________________________________________
>>> >> Bioc-devel using r-project.org mailing list
>>> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>> >>
>>> >
>>>
>>> --
>>> Cheers,
>>> Sokratis Kariotis
>>> PhD Student
>>> University of Sheffield, Medical School
>>> MedTech <https://www.facebook.com/medtechsheffield/>President
>>> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
>>> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>>>
>>>         [[alternative HTML version deleted]]
>>>
>>> _______________________________________________
>>> Bioc-devel using r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>
>>
>
> --
> Cheers,
> Sokratis Kariotis
> PhD Student
> University of Sheffield, Medical School
> MedTech <https://www.facebook.com/medtechsheffield/>President
> Twitter: @s_kariotis <https://twitter.com/s_kariotis>
> LinkedIn: http://www.linkedin.com/in/sokratiskariotis
>


-- 
Cheers,
Sokratis Kariotis
PhD Student
University of Sheffield, Medical School
MedTech <https://www.facebook.com/medtechsheffield/>President
Twitter: @s_kariotis <https://twitter.com/s_kariotis>
LinkedIn: http://www.linkedin.com/in/sokratiskariotis

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