[Bioc-devel] Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available

Interdonato, Kayla K@y|@@Morre|| @end|ng |rom Ro@we||P@rk@org
Fri Sep 22 19:37:08 CEST 2023


Hello Bioconductor community,

The newest db0, OrgDb, and TxDb annotation packages for the upcoming Bioconductor 3.18 release are up and available for download in the devel version of Bioconductor.

The deadline for submitting contributed annotation packages will be Wednesday October 11th.

The new db0 packages are:

anopheles.db0_3.18.0.tar.gz
arabidopsis.db0_3.18.0.tar.gz
bovine.db0_3.18.0.tar.gz
canine.db0_3.18.0.tar.gz
chicken.db0_3.18.0.tar.gz
chimp.db0_3.18.0.tar.gz
ecoliK12.db0_3.18.0.tar.gz
ecoliSakai.db0_3.18.0.tar.gz
fly.db0_3.18.0.tar.gz
human.db0_3.18.0.tar.gz
malaria.db0_3.18.0.tar.gz
mouse.db0_3.18.0.tar.gz
pig.db0_3.18.0.tar.gz
rat.db0_3.18.0.tar.gz
rhesus.db0_3.18.0.tar.gz
worm.db0_3.18.0.tar.gz
xenopus.db0_3.18.0.tar.gz
yeast.db0_3.18.0.tar.gz
zebrafish.db0_3.18.0.tar.gz

The new OrgDb packages are:

GO.db_3.18.0.tar.gz
org.Ag.eg.db_3.18.0.tar.gz
org.At.tair.db_3.18.0.tar.gz
org.Bt.eg.db_3.18.0.tar.gz
org.Ce.eg.db_3.18.0.tar.gz
org.Cf.eg.db_3.18.0.tar.gz
org.Dm.eg.db_3.18.0.tar.gz
org.Dr.eg.db_3.18.0.tar.gz
org.EcK12.eg.db_3.18.0.tar.gz
org.EcSakai.eg.db_3.18.0.tar.gz
org.Gg.eg.db_3.18.0.tar.gz
org.Hs.eg.db_3.18.0.tar.gz
org.Mm.eg.db_3.18.0.tar.gz
org.Mmu.eg.db_3.18.0.tar.gz
org.Pt.eg.db_3.18.0.tar.gz
org.Rn.eg.db_3.18.0.tar.gz
org.Sc.eg.db_3.18.0.tar.gz
org.Ss.eg.db_3.18.0.tar.gz
org.Xl.eg.db_3.18.0.tar.gz
Orthology.eg.db_3.18.0.tar.gz
PFAM.db_3.18.0.tar.gz

The new TxDb packages are:

TxDb.Hsapiens.UCSC.hg38.knownGene_3.18.0.tar.gz
TxDb.Hsapiens.UCSC.hg38.refGene_3.18.0.tar.gz
TxDb.Mmusculus.UCSC.mm39.knownGene_3.18.0.tar.gz
TxDb.Mmusculus.UCSC.mm39.refGene_3.18.0.tar.gz

Thank you!

Kayla E. Interdonato, MS
Programmer/Analyst � Morgan Lab
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
(716)845-1300 x4621


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