[Bioc-devel] synaptome.db check error

Jennifer Wokaty Jenn||er@Wok@ty @end|ng |rom @ph@cuny@edu
Fri Sep 1 17:48:57 CEST 2023


Hi Anatoly,

I see we got a few of these on the most recent build. No action is needed as the Bioconductor build system will remove the lock files on the next run next Wednesday.

Jennifer Wokaty (they/them)

Waldron Lab at CUNY SPH
Bioconductor Core Team
________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Anatoly Sorokin <lptolik using gmail.com>
Sent: Friday, September 1, 2023 6:34 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] synaptome.db check error

* This email originates from a sender outside of CUNY. Verify the sender before replying or clicking on links and attachments. *

Dear all,
I've found a strange error on *nebbiolo2
<https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.18%2Fdata-annotation-LATEST%2Fnebbiolo2-NodeInfo.html__%3B!!PxiZbSOawA!OxBOK7v_etZ8bAv-qRxlhci8I2O9RM1QCBFcLfhFFOwov1NvgVB9VmnJfPhHzMCVFo-5mitDjaEDAFDKYYbLP1u8YQ%24&data=05%7C01%7Cjennifer.wokaty%40sph.cuny.edu%7Ca796973f07ed49411b7808dbaad73b31%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638291613648265413%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=v%2BwY9PvGaH64mEpbJowtFOTerNW1EJaQPaOPYmtoLPU%3D&reserved=0 >*
check
server for our package synaptome.db:

* installing to library �/home/biocbuild/bbs-3.18-bioc/R/site-library�
ERROR: failed to lock directory
�/home/biocbuild/bbs-3.18-bioc/R/site-library� for modifying
Try removing �/home/biocbuild/bbs-3.18-bioc/R/site-library/00LOCK-metaboliteIDmapping�


What should I do to get rid of it?
Cheers,
Anatoly

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