[Bioc-devel] RCAS build error on Nebbiolo2 - Missing BiocManager

[Bor@@Uy@r m@iii@g oii mdc-berii@@de]

Hi Bioc-Devel Team,

My package RCAS has been getting build errors on Nebbiolo2. It fails to run the tests/examples/vignettes all due to a missing dependency, which can’t be installed because BiocManager is not available.

Here is the build report:
https://bioconductor.org/checkResults/release/bioc-LATEST/RCAS/nebbiolo2-checksrc.html

The relevant error is :

Error in get_data_annotation_contrib_url(type) :
  Install 'BiocManager' from CRAN to get 'BioCann' contrib.url

Error: processing vignette 'RCAS.vignette.Rmd' failed with diagnostics:
Install 'BiocManager' from CRAN to get 'BioCann' contrib.url

The other machines all build it properly.

Best,
Bora

-----------
Dr. Bora Uyar
Bioinformatics Scientist
Bioinformatics and Omics Data Science Platform
Max Delbrueck Center (MDC) for Molecular Medicine
The Berlin Institute for Medical Systems Biology
Hannoversche Str. 28, 10115 Berlin



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