[Bioc-devel] Availability of DropletUtils on BBS for an experiment package

[Leonardo Collado Torres]

Thank you Jennifer! I just made that change on both release and devel.

https://github.com/LieberInstitute/spatialLIBD/commit/94048657dd0cf134b8e2347933e4302f75cec415

Best,
Leo

Leonardo Collado Torres, Ph. D.
Investigator, LIEBER INSTITUTE for BRAIN DEVELOPMENT
Assistant Professor, Department of Biostatistics
Johns Hopkins Bloomberg School of Public Health
855 N. Wolfe St., Room 385
Baltimore, MD 21205
lcolladotor.github.io
lcolladotor using gmail.com



On Wed, Nov 29, 2023 at 12:17 PM Jennifer Wokaty
<Jennifer.Wokaty using sph.cuny.edu> wrote:
>
> Hi Leo,
>
> spatialLIBD is missing DropletUtils in Suggests in the DESCRIPTION. If you add it there and bump the version, it will pass check.
>
> Jennifer Wokaty (they/them)
>
> Waldron Lab at CUNY SPH
> Bioconductor Core Team
> ________________________________
> From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Leonardo Collado Torres <lcolladotor using gmail.com>
> Sent: Wednesday, November 29, 2023 9:11 AM
> To: Bioc-devel <bioc-devel using r-project.org>
> Subject: [Bioc-devel] Availability of DropletUtils on BBS for an experiment package
>
> * This email originates from a sender outside of CUNY. Verify the sender before replying or clicking on links and attachments. *
>
> Hi BioC-devel,
>
> Do you know why DropletUtils is not available on bioc 3.18 for the
> BBS? I keep seeing errors about it at
> https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fmaster.bioconductor.org%2FcheckResults%2F3.18%2Fdata-experiment-LATEST%2FspatialLIBD%2Fnebbiolo2-checksrc.html__%3B!!PxiZbSOawA!MFQ9mQCSL0x9pjrtdNr8LWIDL0WyBTRjA94qKNvwpWf6HssqHzvkEzT004js2ZQHI93BSdxwPqalkF4csGWCa7fEqcixawg%24&data=05%7C01%7Cjennifer.wokaty%40sph.cuny.edu%7C006d56be16e4471e318e08dbf0e545b7%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638368639765624428%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=G3JE%2FgBKp137DCvhmhcREQb%2F4sG%2BBd0cZkjlJm1P034%3D&reserved=0
> (which is an Experiment package, not a Software one)
>
> Quitting from lines 178-193 [import_to_r] (TenX_data_download.Rmd)
> Error: processing vignette 'TenX_data_download.Rmd' failed with diagnostics:
> there is no package called 'DropletUtils'
> --- failed re-building ‘TenX_data_download.Rmd’
>
> At https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fbioconductor.org%2Fpackages%2Frelease%2Fbioc%2Fhtml%2FDropletUtils.html__%3B!!PxiZbSOawA!MFQ9mQCSL0x9pjrtdNr8LWIDL0WyBTRjA94qKNvwpWf6HssqHzvkEzT004js2ZQHI93BSdxwPqalkF4csGWCa7fE7mWBMjo%24&data=05%7C01%7Cjennifer.wokaty%40sph.cuny.edu%7C006d56be16e4471e318e08dbf0e545b7%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638368639765635135%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=w2%2BOmrICIKKycrQtbt56gSs0mt9Bc536baQbFhY8nts%3D&reserved=0 ,
> I do see that all binaries and the source package are available.
>
> Thanks,
> Leo
>
>
> Leonardo Collado Torres, Ph. D.
> Investigator, LIEBER INSTITUTE for BRAIN DEVELOPMENT
> Assistant Professor, Department of Biostatistics
> Johns Hopkins Bloomberg School of Public Health
> 855 N. Wolfe St., Room 385
> Baltimore, MD 21205
> lcolladotor.github.io
> lcolladotor using gmail.com
>
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