[Bioc-devel] Availability of DropletUtils on BBS for an experiment package

[Jennifer Wokaty]

Hi Leo,

spatialLIBD is missing DropletUtils in Suggests in the DESCRIPTION. If you add it there and bump the version, it will pass check.

Jennifer Wokaty (they/them)

Waldron Lab at CUNY SPH
Bioconductor Core Team
________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Leonardo Collado Torres <lcolladotor using gmail.com>
Sent: Wednesday, November 29, 2023 9:11 AM
To: Bioc-devel <bioc-devel using r-project.org>
Subject: [Bioc-devel] Availability of DropletUtils on BBS for an experiment package

* This email originates from a sender outside of CUNY. Verify the sender before replying or clicking on links and attachments. *

Hi BioC-devel,

Do you know why DropletUtils is not available on bioc 3.18 for the
BBS? I keep seeing errors about it at
https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fmaster.bioconductor.org%2FcheckResults%2F3.18%2Fdata-experiment-LATEST%2FspatialLIBD%2Fnebbiolo2-checksrc.html__%3B!!PxiZbSOawA!MFQ9mQCSL0x9pjrtdNr8LWIDL0WyBTRjA94qKNvwpWf6HssqHzvkEzT004js2ZQHI93BSdxwPqalkF4csGWCa7fEqcixawg%24&data=05%7C01%7Cjennifer.wokaty%40sph.cuny.edu%7C006d56be16e4471e318e08dbf0e545b7%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638368639765624428%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=G3JE%2FgBKp137DCvhmhcREQb%2F4sG%2BBd0cZkjlJm1P034%3D&reserved=0<https://urldefense.com/v3/__https://master.bioconductor.org/checkResults/3.18/data-experiment-LATEST/spatialLIBD/nebbiolo2-checksrc.html__;!!PxiZbSOawA!MFQ9mQCSL0x9pjrtdNr8LWIDL0WyBTRjA94qKNvwpWf6HssqHzvkEzT004js2ZQHI93BSdxwPqalkF4csGWCa7fEqcixawg$>
(which is an Experiment package, not a Software one)

Quitting from lines 178-193 [import_to_r] (TenX_data_download.Rmd)
Error: processing vignette 'TenX_data_download.Rmd' failed with diagnostics:
there is no package called 'DropletUtils'
--- failed re-building �TenX_data_download.Rmd�

At https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fbioconductor.org%2Fpackages%2Frelease%2Fbioc%2Fhtml%2FDropletUtils.html__%3B!!PxiZbSOawA!MFQ9mQCSL0x9pjrtdNr8LWIDL0WyBTRjA94qKNvwpWf6HssqHzvkEzT004js2ZQHI93BSdxwPqalkF4csGWCa7fE7mWBMjo%24&data=05%7C01%7Cjennifer.wokaty%40sph.cuny.edu%7C006d56be16e4471e318e08dbf0e545b7%7C6f60f0b35f064e099715989dba8cc7d8%7C0%7C0%7C638368639765635135%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=w2%2BOmrICIKKycrQtbt56gSs0mt9Bc536baQbFhY8nts%3D&reserved=0<https://urldefense.com/v3/__https://bioconductor.org/packages/release/bioc/html/DropletUtils.html__;!!PxiZbSOawA!MFQ9mQCSL0x9pjrtdNr8LWIDL0WyBTRjA94qKNvwpWf6HssqHzvkEzT004js2ZQHI93BSdxwPqalkF4csGWCa7fE7mWBMjo$> ,
I do see that all binaries and the source package are available.

Thanks,
Leo


Leonardo Collado Torres, Ph. D.
Investigator, LIEBER INSTITUTE for BRAIN DEVELOPMENT
Assistant Professor, Department of Biostatistics
Johns Hopkins Bloomberg School of Public Health
855 N. Wolfe St., Room 385
Baltimore, MD 21205
lcolladotor.github.io
lcolladotor using gmail.com

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