[Bioc-devel] Unable to install Bioconductor despite multiple attempts and troubleshooting

[Sean Davis]

Hi, Chiagozie.

This list is mainly for developer questions. Your best bet is to ask on
https://support.bioconductor.org/ where you'll get many more eyes on your
question and the broadest possible community will benefit from answers.
When you ask there, consider adding the output of sessionInfo() to allow
folks to best understand your R setup.

Sean


On Tue, Nov 7, 2023 at 11:56 AM Chiagozie Ifeoma Pickens <
Chiagozie-Ononye using northwestern.edu> wrote:

> Hi! I am wondering if you have any other suggestions on how to install the
> Bioconductor package?
> I keep getting this error message even though I am on the internet and
> this website https://bioconductor.org/config.yaml works.
> I have also discussed with my IT department and they cannot find any
> issues with the SSL connection, and I am not behind a firewall that is
> affecting this website.
>
>
> BiocManager::install()
> Error: Bioconductor version cannot be validated; no internet connection?
> See #troubleshooting section in vignette
> In addition: Warning messages:
> 1: In file(con, "r") :
>   URL 'https://bioconductor.org/config.yaml': status was 'SSL connect
> error'
> 2: In file(con, "r") :
>   URL 'https://bioconductor.org/config.yaml': status was 'SSL connect
> error'
> > BiocManager::install()
>
> Thanks,
> Chiagozie
>
> Chiagozie Pickens MD MSc
> Assistant Professor
> Division of Pulmonary and Critical Care
> Northwestern University
>
> McGaw Medical Center
> 240 E Huron #2-411
> Chicago IL 60611
> Pager: 312.695.3562
> Email: Chiagozie-ononye using northwestern.edu
>
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