[Bioc-devel] Package Classifications via BiocViews

[Kern, Lori]

Changing the biocviews is not sufficient.  There needs to be work on our end to change the manifest the package belongs to and to clear the build products from the data repositories so it is only found in one location.

Are you sure you want to proceed with switching?  It is not trivial on our end.


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Burak Ogan Mancarci <ogan.mancarcii using gmail.com>
Sent: Wednesday, September 28, 2022 9:17 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] Package Classifications via BiocViews

Hi,

I am a developer working on the bioconductor package gemma.R
<https://secure-web.cisco.com/1wIQY41Mq8CRYqLq1luoPm43XSj6Icl27w6udr35y-BxPHgEP6B5pApAAeBdBeWsydixV0CSwBVIVl2C7mJykPI3ESX7qtp-xJOSvJAu4T1yzHr3CWRc7s6LY_WtIcrnzfyw3MI7z0oqv1hzA1x5oRN1kFZ-KF6tttbi86SwIwZhYADSMaK1xXJxmlZ0Oe8CtJ6jKBrSjnn6fnDONMFHadvspGk8Gxc7N15gdoVzcbADiR0q1V7O973S1e0Fu6CFPAayqcCBKIOs4_xfp6nm1HNupK82P0Bawyi3Bc4Fu2vcDQKLcgU-gyiBMkego3WW4/https%3A%2F%2Fbioconductor.org%2Fpackages%2F3.16%2Fdata%2Fexperiment%2Fhtml%2Fgemma.R.html>.
On publication we have used the ExperimentData biocview to classify the
package but we believe this was not the correct decision since the
package's function is to access a database much like geoquery. I was
wondering if it was safe to change the classification on our end by
changing biocviews directly or if it would cause issues with the
bioconductor infrastructure?

Cheers,
Ogan

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