[Bioc-devel] How to fix the error checked in the development version of miRspongeR

Zhang Junpeng zh@ngjunpeng411 @end|ng |rom gm@||@com
Sat Sep 24 02:42:13 CEST 2022

Thanks,  Hervé for your reply.

Now, this error has been fixed (
According to your suggestion, I have just imported the functions used in
miRspongeR from SPONGE. In addition, I have removed the line
'library(SPONGE)' in vignettes.

If possible, I will fork a part of functions in SPONGE instead of importing


Hervé Pagès <hpages.on.github using gmail.com> 于2022年9月24日周六 03:00写道:

> On 21/09/2022 07:57, Hervé Pagès wrote:
> > Just a workaround and not a real solution but maybe try to switch the
> > order of the clusterProfiler and SPONGE reports?
> >
> Oops, I meant "imports", not "reports".
> But, again, reducing the huge number of dependencies of both miRspongeR
> and SPONGE should be a priority. Something that you might want to
> discuss/coordinate with the SPONGE folks.
> Best,
> H.
> --
> Hervé Pagès
> Bioconductor Core Team
> hpages.on.github using gmail.com

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