[Bioc-devel] Rebuilding package

[Kern, Lori]

as long as you bumped the version with the changes, it should propagate on the next build/check of the package.  Release only rebuilds Monday, Wednesday, and Friday -- depending on when you pushed the changes they might not be visible until after Friday's posting.

Cheers,


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Lyla Atta <lylaatta using jhmi.edu>
Sent: Wednesday, September 7, 2022 10:31 AM
To: Kern, Lori <Lori.Shepherd using RoswellPark.org>; bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: Rebuilding package

Hi all, thanks for the help.

Following Vince's email, I pushed the changes to the RELEASE_3_15 branch, but I did not bump the version in a separate commit. Please let me know if that is sufficient and if not how to proceed.

Thanks!
Lyla

---
Lyla Atta
MD-PhD Candidate at jef.works<https://secure-web.cisco.com/1yXLVLtTUsEqo-brFDUKsvN0rXyeB7fqoaB1AaN0jHtrwzX91UqaAaxJFXpBD7UAxSN6E-kK4Ck8ZF7zPwHPALmfquhX8ecqrzgBVk91MRZtJKq_uXMB1xDfCzkySpFh2v0gem0jIUFOSJw3AgceW5f4HokXxr_TZ2dlDA5e443GTPeiQ6d-A_9NWRLNyf67qVzAxtEi6jDZ-P8diKEuUP1qPzj9L5fEEgwOE9fEnc9G-X9Cib8DK1mEx8MBCzgsfZtWinxRqrFBFWsts91_6WBok0QY13aMA_5efuItjEGKFVfvskgO92o47-M8a94jM/https%3A%2F%2Fjef.works%2F>
Department of Biomedical Engineering
Johns Hopkins University School of Medicine
lylaatta.github.io<https://secure-web.cisco.com/1_fp97CZ5FzpwJsWOu6Vnfo7g0v7qEyFAVOjVKCEbu2kEVfQ3T4vDbe2zjkf5sojxvQh1nx7xxRehHAULMcl3Spo-X3rng6NwdDcX2uiUIJWALXoNmtOIZ_PuKk0qCM0k4X8d1ePmIc5YK6rZ4ugIwHlvxipR3VysAAKr4m24oQO1THUW2vUYdJtEyUiPqLT0_deDEBPrLDhe0iovAxKYBgmlxcYoVzjfekmWFdtI-0_HAShDvbHFqwXdwSEI5wKZd9ZvH8wApPqXVO_9PEzsvjU3UooJJFoVrSsY-51FfGrkXv8MQzesOFjuAUUgB8LX/https%3A%2F%2Flylaatta.github.io%2F>
________________________________
From: Kern, Lori <Lori.Shepherd using RoswellPark.org>
Sent: Tuesday, September 6, 2022 7:57 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>; Lyla Atta <lylaatta using jhmi.edu>
Subject: Re: Rebuilding package


      External Email - Use Caution



As Sean and Vince have pointed out, there are different scenerios for fixing in release and devel.

We do see your corrections applied and pushed to devel:
http://bioconductor.org/checkResults/devel/bioc-LATEST/veloviz/<https://nam02.safelinks.protection.outlook.com/?url=http%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2Fveloviz%2F&data=05%7C01%7Clylaatta%40jhmi.edu%7Cfa2f4a48ed594ce3148108da8fff127d%7C9fa4f438b1e6473b803f86f8aedf0dec%7C0%7C0%7C637980623049475511%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=RCC7hc0Jy%2BppCM6iZ%2BlgSKXEKkGcWKPk2bYyqlPnjRU%3D&reserved=0>

You will need to also push to the RELEASE_3_15 branch as Vince pointed out to correct in release.
Here is some specific documentation on pushing on release and devel:
http://contributions.bioconductor.org/git-version-control.html#bug-fix-in-release-and-devel<https://nam02.safelinks.protection.outlook.com/?url=http%3A%2F%2Fcontributions.bioconductor.org%2Fgit-version-control.html%23bug-fix-in-release-and-devel&data=05%7C01%7Clylaatta%40jhmi.edu%7Cfa2f4a48ed594ce3148108da8fff127d%7C9fa4f438b1e6473b803f86f8aedf0dec%7C0%7C0%7C637980623049475511%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=uerjVAOoxJPdWQJbAWfdE%2BExEMG9iVQh7aOdv0D8foY%3D&reserved=0>

Cheers,


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Lyla Atta via Bioc-devel <bioc-devel using r-project.org>
Sent: Friday, September 2, 2022 4:55 PM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] Rebuilding package

Hello,

I received a notification that my package (veloviz) is failing to build on the new release. I made the appropriate changes and pushed to github with a version bump. I am still receiving the error and when checking the build results (linked below), it seems like my updates didn't trigger a rebuild with the package changes.

https://secure-web.cisco.com/1GaeNdhcXa3aLoQGi7QAqk1XrLhf-IByUrfZRBQmSKoWI7C0c2F7qFnwyCs2kyCmHaTfTLDDjgZqUueusINfJjsjuPXCjo7KaEX_9Q6SBsc7Bh9fVXPuxk1SFMUUquzbl6JEH5xjv-6hxDZXjR7FHfWLkeY5ySugNqQGSHxKlC6PqDBpuqQ7iQbDtfXnbkgv8AUpKSgZ2_ks71lzH4a_b1wQVFyEr_XD2PAku_Lx044oZd_WUbmh1gcBp-H6eRs8ywMl3ThvMcHyJRinIWp0klupDm06VXp1XH7-cn0iAn2ioRQ36t4UdnaMdsEkBX71dgfUTXrptkbPIN18AabSl9g/https%3A%2F%2Fmaster.bioconductor.org%2FcheckResults%2F3.15%2Fbioc-LATEST%2Fveloviz%2Fnebbiolo1-buildsrc.html

Do you have any insights on how to proceed?

Thanks!

Lyla

---
Lyla Atta
MD-PhD Candidate at jef.works<https://secure-web.cisco.com/1Tkvo2iKUcFqG4QBGBz_bN_uLgeuq-zIz1sOmVgs_sdh0o0JfEWc9SLiDMLyO0qWFImIfxKw0vXoMgfo_m1Nl5XK0n1rthicBL2fK4_MqZWxpo5-muj5s-zbqUAcbTxyTmJDFYmn5ngd0alv-ZbfP-p9eBkLURacsCGemxKqKH27CNlrCIjgZwI5g-376nx-yv_r125C3ZtM8yBwuZrfc4Law67mloxqsF-W3iBKNTri34ZFXt6Vp17_fZVwy_sz4W9J6XVC4fv_wBnt_64CQ784LZbZWBp9z1LgZZlQHtBm7syuxvmhXlnKRvprFLI7I/https%3A%2F%2Fjef.works%2F>
Department of Biomedical Engineering
Johns Hopkins University School of Medicine
lylaatta.github.io<https://secure-web.cisco.com/1HYfrOVyHjN7PJKmBqTUmjcXRx4-jSppY-AT113y_bRdgxn5abfkcdqlLn4YqnZ2PPfc9dAccgrEqrFidx0_P0pSL4fwHR7OXks4HBIUhLzyQhp15lkwurdVNAwZ1ewEUOhkkPUSBBAEAcYwemuCZY98FVLG5MSLT80kNcYRzBBBHYGpIZXZIA98T_yn1Dyuftra5qG04fM9g8fFasc4EII7bEz-xLBNd_gDpxPsNUv69Oy49ujqjAxOkwiM5i-TIDYvQZBkx_UisJcS_-p6eqam0i--hmKg0Eecc547oX00PxKWcb9QBoUoeQELnCcgZ/https%3A%2F%2Flylaatta.github.io%2F>

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