[Bioc-devel] List of Deprecated Packages for Bioc3.16

Kern, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Fri Oct 21 20:12:05 CEST 2022

The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. This is the current list of deprecated packages for Bioc 3.16:


User Requested:

  *   AffyCompatible
  *   BitSeq
  *   flowUtils
  *   flowCL
  *   PoTRA
  *   TCGAbiolinksGUI
  *   tspair


  *   BrainSABER
  *   bridge
  *   cellTree
  *   ctgGEM
  *   coexnet
  *   coMET
  *   conclus
  *   CytoTree
  *   DEComplexDisease
  *   gaia
  *   gpart
  *   inveRsion
  *   IsoGeneGUI
  *   iteremoval
  *   MACPET
  *   Rcade
  *   RNASeqR
  *   scAlign
  *   scMAGeCK
  *   sojourner
  *   TimeSeriesExperiment
  *   TraRe
  *   XCIR


User Requested:

  *   gatingMLData


  *   RNASeqRData

It should be noted, we did try to reach out to these package maintainers multiple times and they were either unresponsive or had emails bounce. We encourage anyone that is familiar with a package maintainer on this list to reach out to them and notify them directly. Packages can be un-deprecated if a maintainer fixes the package to build/check cleanly before the next release and requests un-deprecation on the bioc-devel using r-project.org mailing list

Please do not un-deprecate packages on your own. You need to notify the Bioconductor Core Team to do this.

Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
	[[alternative HTML version deleted]]

More information about the Bioc-devel mailing list