[Bioc-devel] Version number trouble

Brüggemann, Mirko m|rko@brueggem@nn @end|ng |rom bm|@@de
Tue Oct 11 07:22:31 CEST 2022

Hi Vincent,

thanks for the clarification. I can now see where I went wrong. I’ve dumped the version number from 1.3.0 to 1.3.1 now.

Thanks a lot

Von: Vincent Carey <stvjc using channing.harvard.edu>
Datum: Montag, 10. Oktober 2022 um 18:26
An: "Brüggemann, Mirko" <mirko.brueggemann using bmls.de>
Cc: "bioc-devel using r-project.org" <bioc-devel using r-project.org>
Betreff: Re: [Bioc-devel] Version number trouble

Hi Mirko -- the devel branch has an odd y in x.y.z

stvjc using stvjc-XPS-13-9300:~/BIOC_SOURCES$ cd BindingSiteFinder
stvjc using stvjc-XPS-13-9300:~/BIOC_SOURCES/BindingSiteFinder$ grep Version DE*
Version: 1.3.0
stvjc using stvjc-XPS-13-9300:~/BIOC_SOURCES/BindingSiteFinder$ git fetch --all
Fetching origin

The current release branch has an even y in x.y.z

stvjc using stvjc-XPS-13-9300:~/BIOC_SOURCES/BindingSiteFinder$ git checkout RELEASE_3_15
Branch 'RELEASE_3_15' set up to track remote branch 'RELEASE_3_15' from 'origin'.
Switched to a new branch 'RELEASE_3_15'
stvjc using stvjc-XPS-13-9300:~/BIOC_SOURCES/BindingSiteFinder$ grep Version DE*
Version: 1.2.0
stvjc using stvjc-XPS-13-9300:~/BIOC_SOURCES/BindingSiteFinder$ git remote -v
origin git using git.bioconductor.org:packages/BindingSiteFinder (fetch)
origin git using git.bioconductor.org:packages/BindingSiteFinder (push)

By managing the current checkout you can make changes in a selected branch,
incrementing z in x.y.z in the associated DESCRIPTION file as necessary

Full details at https://contributions.bioconductor.org/git-version-control.html

On Mon, Oct 10, 2022 at 12:19 PM Brüggemann, Mirko <mirko.brueggemann using bmls.de<mailto:mirko.brueggemann using bmls.de>> wrote:

I’m having some troubles updating my package(BindingSiteFinder) on the devel branch.

I’ve made some changes to the code and as always incremented the z part of the version number. Then I realized that the y part of the version number was already changed by the Bioconductor team (to 1.3.0). I guess in preparation for the new release. So, I left the version number like this, to not mess things up.

Now my package does compile without errors or warnings, but my changes do not show on the devel landing page. Also, I still want to push some more changes prior to the upcoming release.

My question is how do I properly set the version numbers here? Do I keep it with the y part set to the new release and then increment the z part (so 1.3.0 to 1.3.1?), or do I go back to the lates version number? Since I did not push any changes in the last cycle it would then be 1.2.1. And if I do will the package still build in the new release?

Maybe someone knows what to do here?

Thanks a lot in advance

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