[Bioc-devel] Issue with a package dependent on rJava
DR J Aravind
J@Ar@v|nd @end|ng |rom |c@r@gov@|n
Mon Oct 10 00:32:48 CEST 2022
Dear Bioconductor Developers,
My package `rmelting` is failing to build on release (3.15) and devel (3.16) versions for the following systems.
- palomino3 (Windows Server 2022 Datacenter / x64)
- palomino4 (Windows Server 2022 Datacenter / x64)
- lconway (macOS 12.5.1 Monterey / x86_64)
The error message is as follows.
* creating vignettes ... ERROR
--- re-building 'Tutorial.Rmd' using rmarkdown_notangle
Quitting from lines 195-197 (Tutorial.Rmd)
Error: processing vignette 'Tutorial.Rmd' failed with diagnostics:
java.lang.IllegalAccessException: class RJavaTools cannot access a member of class java.util.HashMap$KeySet (in module java.base) with modifiers "public final"
--- failed re-building 'Tutorial.Rmd'
SUMMARY: processing the following file failed:
I am unable to replicate the same on my end.
It seems to be an issue with java. The package is a low level interface to a software written in Java 1.5 using `rJava`. I have tried with different java versions upto 1.8.
Any pointers or suggestions to fix the same will be appreciated.
ICAR-National Bureau of Plant Genetic Resources
New Delhi, India
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