[Bioc-devel] EnMCB ERROR on nebbiolo2

[Kern, Lori]

I have reset this resource. Hopefully it will clear up on the next build.


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: whirlsyu <whirlsyu using gmail.com>
Sent: Saturday, November 5, 2022 4:21 AM
To: Kern, Lori <Lori.Shepherd using RoswellPark.org>; bioc-devel <bioc-devel using r-project.org>
Subject: EnMCB ERROR on nebbiolo2

Dear Bioconductor team,

Our package EnMCB has encounter a problem on nebbiolo2 which indicated as following.

This problem is only appeared on nebbiolo2 and maybe cased by BiocFileCache package function.

Could you please help me to find the problem and indicate us how to fix it?

Thank you in advance!

Yours,

Xin


##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data EnMCB
###
##############################################################################
##############################################################################


* checking for file ��EnMCB/DESCRIPTION�� ... OK
* preparing ��EnMCB��:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ��vignette.Rmd�� using rmarkdown
Warning in gzfile(file, "rb") :
  cannot open compressed file '/home/biocbuild/.cache/R/BiocFileCache/24b5b01ea20c24_file24b5b07851806e', probable reason 'No such file or directory'
Quitting from lines 42-49 (vignette.Rmd)
Error: processing vignette 'vignette.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ��vignette.Rmd��

SUMMARY: processing the following file failed:
  ��vignette.Rmd��

Error: Vignette re-building failed.
Execution halted


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