[Bioc-devel] PanomiR failing on the devel builders, dependency errors

Kern, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Fri Mar 25 19:00:53 CET 2022

This will resolve on its own.  It looks like metap has not yet been built for R devel 4.2.  Once it is available, Bioconductor will download.  You do not need to do anything at this time and your package will remain in Bioconductor.


Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Pourya naderi <pouryany using gmail.com>
Sent: Friday, March 25, 2022 1:56 PM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] PanomiR failing on the devel builders, dependency errors

Dear BioC team,

My package, PanomiR, recently started to fail to build on MacOS merida1 <
https://secure-web.cisco.com/1LGd6EaQOT8XuamxIYwRIGyAOqHpud37ZySZ6b8Gvzi9a98Lc1wbgPMERIkPyCJcc1kMRYxMifL_jlibrS-D2jjDQRWacgNoclP-wY9vcP794os8SHs6G-AmdRZRVZbTAKHfZ0-MGvornOC9YVBZyzrcPR8k-2nvxsducQaP_Dmq93b_OTWN47vaghRnpEUQjt9DYQoC-Dg5qwGTUu9uvchldatMCnCtruCc19IZC_TeChXRvoYkEVecdQo3VPPuechExEWS9Oh_6P1CadCKYo5x_WNihmmvNhnbmvoCi9KAACyy2wkLISzLxBbMU4ton/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.15%2Fbioc-LATEST%2FPanomiR%2F>. The error
message says: "dependency �metap� is not available for package �PanomiR�."
The package builds without errors on palomina3 and nebbiolo1.

I just received a message that my package will be removed unless the issue
is resolved. Is this a transient issue on merida1? Or should look for
alternate solutions to replace "metap" dependencies?

Pourya Naderi,


Postdoctoral fellow,

Beth Israel Deaconess Medical Center,

Harvard Medical School

330 Brookline Avenue (Dana 535)

Boston, MA

Tel: 617-667-4146

Twitter: @pouryany <https://secure-web.cisco.com/1DxbLI934uhm_D5xHZRKTpbQuPMNpjdbeAxdj_QJYVgs76H8GAhxp2b6cgwruzYlaNe4hTyrwDjzdAiZFtO5IWgBY880fl-4k16stKY7okWAreARa0uJs0pctGP0-e3kS2351jNfsJ60MyWKWGqFIqe4Badw77byLCL0AQbsuwlOlGQ0MZTbPNRmgfSNap1TYszpW-uPuXE_8WFOm8JkItFSaZrqrBhHx9dtwwSlQQC5KZco0ul2roRTv4wxz_k2i4IjTiIiVORPG6DFZgfWG2rEpu61faNB-cPof-JQetlXmReQZpVAGLJaaCUUjI8Ma/https%3A%2F%2Ftwitter.com%2Fpouryany>

        [[alternative HTML version deleted]]

Bioc-devel using r-project.org mailing list

This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
	[[alternative HTML version deleted]]

More information about the Bioc-devel mailing list